Guide to the Human Genome
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Name: PAPPA2 Sequence: fasta or formatted (1791aa) NCBI GI: 116174738
Description:

pappalysin 2 isoform 1

Referenced in:

Growth Hormone and Related Hormones
Ovary, Uterus and Placenta

Other entries for this name:
alt prot [827aa] pappalysin 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         90           2
 C cysteine            5.0         89           2
 D aspartate           5.6        100           3
 E glutamate           7.3        130           3
 F phenylalanine       2.9         52           3
 G glycine             7.6        137           2
 H histidine           3.6         64           2
 I isoleucine          3.8         68           2
 K lysine              3.9         69           3
 L leucine             8.9        159           3
 M methionine          1.3         23           2
 N asparagine          3.7         67           2
 P proline             7.5        135           4
 Q glutamine           4.3         77           2
 R arginine            4.7         84           2
 S serine              8.0        143           2
 T threonine           5.5         98           4
 V valine              6.6        119           3
 W tryptophan          1.8         33           1
 Y tyrosine            3.0         54           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pappalysin 2 isoform 1 
PAPPA2                0.444   pappalysin 2 isoform 2 
PAPPA                 0.390   pregnancy-associated plasma protein A preproprotein ...
SVEP1                 0.014   polydom 
SELP                  0.014   selectin P precursor 
CD55                  0.013   decay accelerating factor for complement isoform 2 ...
CD55                  0.013   decay accelerating factor for complement isoform 1 p...
CR1                   0.012   complement receptor 1 isoform S precursor 
CR1                   0.012   complement receptor 1 isoform F precursor 
SELE                  0.012   selectin E precursor 
CFH                   0.012   complement factor H isoform a precursor 
CR2                   0.009   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.009   complement component (3d/Epstein Barr virus) recepto...
CSMD3                 0.008   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.008   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.008   CUB and Sushi multiple domains 3 isoform 1 
CSMD2                 0.007   CUB and Sushi multiple domains 2 
CSMD1                 0.007   CUB and Sushi multiple domains 1 
CFHR4                 0.007   complement factor H-related 4 
SRPX                  0.006   sushi-repeat-containing protein, X-linked 
CFHR3                 0.006   complement factor H-related 3 
C4BPA                 0.006   complement component 4 binding protein, alpha chain p...
F13B                  0.006   coagulation factor XIII B subunit precursor 
SUSD4                 0.006   sushi domain containing 4 isoform a 
C4BPB                 0.006   complement component 4 binding protein, beta chain i...
C4BPB                 0.006   complement component 4 binding protein, beta chain i...
C4BPB                 0.006   complement component 4 binding protein, beta chain i...
C4BPB                 0.006   complement component 4 binding protein, beta chain i...
C4BPB                 0.006   complement component 4 binding protein, beta chain is...
SUSD1                 0.006   sushi domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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