Guide to the Human Genome
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Name: DCC Sequence: fasta or formatted (1447aa) NCBI GI: 110431348
Description:

deleted in colorectal carcinoma

Referenced in:

Fibronectin Family
Gene Structure
Netrins and Laminins
Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         89           2
 C cysteine            1.1         16           2
 D aspartate           4.4         63           3
 E glutamate           5.5         80           2
 F phenylalanine       2.6         37           2
 G glycine             6.4         93           2
 H histidine           1.9         28           2
 I isoleucine          4.7         68           2
 K lysine              4.1         60           2
 L leucine             8.4        121           2
 M methionine          2.1         30           1
 N asparagine          4.1         60           2
 P proline             9.0        130           3
 Q glutamine           4.4         63           2
 R arginine            5.0         73           2
 S serine             10.2        148           3
 T threonine           7.3        105           2
 V valine              8.1        117           3
 W tryptophan          1.4         20           1
 Y tyrosine            3.2         46           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   deleted in colorectal carcinoma 
NEO1                  0.484   neogenin homolog 1 
PRTG                  0.087   protogenin 
DSCAML1               0.087   Down syndrome cell adhesion molecule like 1 
PTPRD                 0.086   protein tyrosine phosphatase, receptor type, D isofo...
DSCAM                 0.085   Down syndrome cell adhesion molecule isoform CHD2-42...
PTPRD                 0.084   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.083   protein tyrosine phosphatase, receptor type, D isofor...
SDK1                  0.083   sidekick 1 
IGDCC3                0.080   putative neuronal cell adhesion molecule 
SDK2                  0.078   sidekick 2 
IGDCC4                0.078   immunoglobulin superfamily, DCC subclass, member 4 [...
PTPRS                 0.072   protein tyrosine phosphatase, receptor type, sigma ...
PTPRF                 0.072   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.072   protein tyrosine phosphatase, receptor type, F isof...
L1CAM                 0.071   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.071   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.071   L1 cell adhesion molecule isoform 1 precursor 
PTPRS                 0.069   protein tyrosine phosphatase, receptor type, sigma ...
CHL1                  0.069   cell adhesion molecule with homology to L1CAM precur...
NRCAM                 0.067   neuronal cell adhesion molecule isoform A precursor ...
NRCAM                 0.065   neuronal cell adhesion molecule isoform B precursor ...
ROBO2                 0.064   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.064   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO3                 0.063   roundabout, axon guidance receptor, homolog 3 
NFASC                 0.061   neurofascin isoform 2 precursor 
ROBO1                 0.061   roundabout 1 isoform d 
ROBO1                 0.061   roundabout 1 isoform c 
LOC642132             0.061   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.061   PREDICTED: similar to roundabout 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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