Guide to the Human Genome
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Name: GPR172A Sequence: fasta or formatted (445aa) NCBI GI: 13375682
Description:

G protein-coupled receptor 172A

Referenced in:

G-Protein-coupled Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         58           3
 C cysteine            2.9         13           2
 D aspartate           1.3          6           1
 E glutamate           2.9         13           3
 F phenylalanine       4.3         19           2
 G glycine             9.9         44           3
 H histidine           2.0          9           2
 I isoleucine          1.1          5           1
 K lysine              1.1          5           1
 L leucine            18.2         81           5
 M methionine          1.3          6           1
 N asparagine          1.6          7           1
 P proline             9.4         42           4
 Q glutamine           2.7         12           1
 R arginine            2.9         13           2
 S serine              7.6         34           2
 T threonine           3.4         15           2
 V valine             11.0         49           3
 W tryptophan          1.6          7           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G protein-coupled receptor 172A 
GPR172B               0.850   G protein-coupled receptor 172B 
GPR172B               0.850   G protein-coupled receptor 172B 
C20orf54              0.329   hypothetical protein LOC113278 
PABPN1                0.013   poly(A) binding protein, nuclear 1 
XIRP1                 0.013   xin actin-binding repeat containing 1 
DUSP8                 0.012   dual specificity phosphatase 8 
MAP1A                 0.012   microtubule-associated protein 1A 
MFSD9                 0.010   major facilitator superfamily domain containing 9 [...
POGZ                  0.010   pogo transposable element with ZNF domain isoform 1 ...
POGZ                  0.010   pogo transposable element with ZNF domain isoform 2 ...
PRG2                  0.009   plasticity-related protein 2 
SRCAP                 0.009   Snf2-related CBP activator protein 
HCN4                  0.009   hyperpolarization activated cyclic nucleotide-gated p...
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 1 
MEN1                  0.009   menin isoform 2 
PRR12                 0.009   proline rich 12 
SLC4A5                0.009   sodium bicarbonate transporter 4 isoform c 
C6orf132              0.009   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.009   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.009   PREDICTED: hypothetical protein LOC647024 
FMN2                  0.009   formin 2 
ARHGAP17              0.009   nadrin isoform 1 
ARHGAP17              0.009   nadrin isoform 2 
ETV3L                 0.009   ets variant 3-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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