Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288878 Sequence: fasta or formatted (142aa) NCBI GI: 239508931
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {142aa} PREDICTED: hypothetical protein XP_002342781
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         15           2
 C cysteine            3.5          5           1
 D aspartate           2.1          3           1
 E glutamate           2.1          3           1
 F phenylalanine       0.7          1           1
 G glycine             4.2          6           1
 H histidine           9.2         13           2
 I isoleucine          0.7          1           1
 K lysine              0.7          1           1
 L leucine            14.1         20           3
 M methionine          2.1          3           1
 N asparagine          0.0          0           0
 P proline            11.3         16           2
 Q glutamine           4.2          6           1
 R arginine            4.9          7           1
 S serine             12.0         17           2
 T threonine          12.0         17           1
 V valine              4.9          7           2
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288878          1.000   PREDICTED: hypothetical protein XP_002342781 
FLJ22184              0.037   PREDICTED: hypothetical protein LOC80164 
CUX2                  0.037   cut-like 2 
ZAN                   0.033   zonadhesin isoform 3 
ZAN                   0.033   zonadhesin isoform 6 
MUC5AC                0.030   mucin 5AC 
MUC5B                 0.030   mucin 5, subtype B, tracheobronchial 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
MUC2                  0.026   mucin 2 precursor 
MUC17                 0.022   mucin 17 
LOC728857             0.022   PREDICTED: hypothetical protein 
LOC727832             0.018   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.018   golgi autoantigen, golgin subfamily a-like 
LOC642838             0.018   PREDICTED: similar to hCG1742442 
SPEG                  0.018   SPEG complex locus 
TICAM1                0.018   toll-like receptor adaptor molecule 1 
LOC100133408          0.018   PREDICTED: similar to mucin 
LOC647546             0.018   PREDICTED: hypothetical protein 
WWP1                  0.018   WW domain containing E3 ubiquitin protein ligase 1 [...
RNF31                 0.018   ring finger protein 31 
MUC6                  0.018   mucin 6, gastric 
KAL1                  0.018   Kallmann syndrome 1 protein precursor 
LOC100293513          0.015   PREDICTED: hypothetical protein 
LOC100293557          0.015   PREDICTED: hypothetical protein 
LOC100133756          0.015   PREDICTED: hypothetical protein, partial 
LOC100291129          0.015   PREDICTED: hypothetical protein XP_002347815 
LOC645202             0.015   PREDICTED: hypothetical protein LOC645202 
LOC100294343          0.015   PREDICTED: hypothetical protein XP_002344111 
ASAP2                 0.015   ArfGAP with SH3 domain, ankyrin repeat and PH domai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press