Guide to the Human Genome
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Name: LOC100128174 Sequence: fasta or formatted (70aa) NCBI GI: 169172390
Description:

PREDICTED: similar to defensin, beta 131

Not currently referenced in the text

Other entries for this name:
alt prot {70aa} PREDICTED: similar to defensin, beta 131
alt mRNA {70aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          4           1
 C cysteine            8.6          6           2
 D aspartate           5.7          4           1
 E glutamate           5.7          4           1
 F phenylalanine       7.1          5           2
 G glycine             2.9          2           1
 H histidine           2.9          2           1
 I isoleucine          8.6          6           2
 K lysine              7.1          5           2
 L leucine             7.1          5           1
 M methionine          2.9          2           1
 N asparagine          2.9          2           1
 P proline             4.3          3           2
 Q glutamine           1.4          1           1
 R arginine            5.7          4           1
 S serine              8.6          6           1
 T threonine           1.4          1           1
 V valine              5.7          4           1
 W tryptophan          1.4          1           1
 Y tyrosine            4.3          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to defensin, beta 131 
LOC100128174          1.000   PREDICTED: hypothetical protein 
DEFB131               0.977   defensin, beta 131 
LOC100128174          0.969   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.961   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.961   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.961   PREDICTED: similar to defensin, beta 131 
LOC100287066          0.961   PREDICTED: hypothetical protein XP_002342880 
DEFB123               0.078   defensin, beta 123 precursor 
DEFB114               0.078   beta-defensin 114 
DEFB106A              0.055   defensin, beta 106A precursor 
DEFB106B              0.055   defensin, beta 106B precursor 
DEFB129               0.055   beta defensin 129 precursor 
DEFB118               0.039   beta-defensin 118 
DEFB104A              0.023   defensin, beta 104A precursor 
DEFB104B              0.023   defensin, beta 104B precursor 
DEFB108B              0.023   beta-defensin 108B 
MEGF6                 0.023   EGF-like-domain, multiple 3 
LOC100133128          0.016   PREDICTED: hypothetical protein 
DEFB124               0.016   beta-defensin 124 
DEFB134               0.016   beta-defensin 134 
DEFB125               0.008   defensin, beta 125 preproprotein 
DEFB119               0.008   defensin, beta 119 isoform c precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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