Guide to the Human Genome
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Name: LOC100287066 Sequence: fasta or formatted (70aa) NCBI GI: 239743495
Description:

PREDICTED: hypothetical protein XP_002342880

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          3           1
 C cysteine            8.6          6           2
 D aspartate           4.3          3           1
 E glutamate           5.7          4           1
 F phenylalanine       7.1          5           2
 G glycine             2.9          2           1
 H histidine           2.9          2           1
 I isoleucine          8.6          6           2
 K lysine              7.1          5           2
 L leucine             7.1          5           1
 M methionine          2.9          2           1
 N asparagine          2.9          2           1
 P proline             4.3          3           2
 Q glutamine           1.4          1           1
 R arginine            5.7          4           1
 S serine              8.6          6           1
 T threonine           1.4          1           1
 V valine              7.1          5           1
 W tryptophan          1.4          1           1
 Y tyrosine            5.7          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342880 
LOC100128174          0.961   PREDICTED: hypothetical protein 
LOC100128174          0.961   PREDICTED: similar to defensin, beta 131 
DEFB131               0.938   defensin, beta 131 
LOC100128174          0.930   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.922   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.922   PREDICTED: similar to defensin, beta 131 
LOC100129216          0.922   PREDICTED: similar to defensin, beta 131 
DEFB123               0.078   defensin, beta 123 precursor 
DEFB114               0.078   beta-defensin 114 
DEFB106A              0.062   defensin, beta 106A precursor 
DEFB106B              0.062   defensin, beta 106B precursor 
DEFB129               0.055   beta defensin 129 precursor 
DEFB118               0.047   beta-defensin 118 
DEFB134               0.039   beta-defensin 134 
MEGF6                 0.016   EGF-like-domain, multiple 3 
DEFB104A              0.016   defensin, beta 104A precursor 
DEFB104B              0.016   defensin, beta 104B precursor 
DEFB108B              0.008   beta-defensin 108B 
LOC100133128          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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