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Search of human proteins with 110624792
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
(1706 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens] 3502 0.0
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens] 3463 0.0
gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens] 473 e-133
gi|189491748 ataxin 1 [Homo sapiens] 38 0.074
gi|51479158 ataxin 1 [Homo sapiens] 38 0.074
gi|50345881 cytoplasmic polyadenylation element binding protein ... 37 0.13
gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens] 36 0.28
gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens] 36 0.37
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... 36 0.37
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... 36 0.37
gi|24308179 CTTNBP2 N-terminal like [Homo sapiens] 35 0.48
gi|239740955 PREDICTED: similar to c114 SLIT-like testicular pro... 35 0.82
gi|239740953 PREDICTED: similar to c114 SLIT-like testicular pro... 35 0.82
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 35 0.82
gi|116325993 c114 SLIT-like testicular protein [Homo sapiens] 35 0.82
gi|110665701 leucine rich repeat containing 37A [Homo sapiens] 35 0.82
gi|167736355 mucin 4 isoform a [Homo sapiens] 34 1.1
gi|62241026 doublesex and mab-3 related transcription factor 1 [... 34 1.1
gi|24431935 reticulon 4 isoform A [Homo sapiens] 34 1.4
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 34 1.4
gi|187936946 hypothetical protein LOC84140 [Homo sapiens] 34 1.4
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 1.8
gi|189011568 adenomatous polyposis coli [Homo sapiens] 33 2.4
gi|189011566 adenomatous polyposis coli [Homo sapiens] 33 2.4
gi|53759122 adenomatous polyposis coli [Homo sapiens] 33 2.4
gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming ... 33 2.4
gi|46361987 hydroxyacylglutathione hydrolase-like isoform 1 [Hom... 33 2.4
gi|88759339 aster-associated protein [Homo sapiens] 33 2.4
gi|144226251 chitinase 3-like 1 [Homo sapiens] 33 3.1
gi|55750053 atrophin-1 [Homo sapiens] 33 3.1
>gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
Length = 1706
Score = 3502 bits (9082), Expect = 0.0
Identities = 1706/1706 (100%), Positives = 1706/1706 (100%)
Query: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK 180
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
Sbjct: 121 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK 180
Query: 181 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA 240
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
Sbjct: 181 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA 240
Query: 241 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL 300
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
Sbjct: 241 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL 300
Query: 301 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW 360
HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
Sbjct: 301 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW 360
Query: 361 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET 420
FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
Sbjct: 361 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET 420
Query: 421 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY 480
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
Sbjct: 421 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY 480
Query: 481 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP 540
YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
Sbjct: 481 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP 540
Query: 541 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM 600
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
Sbjct: 541 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM 600
Query: 601 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP 660
CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
Sbjct: 601 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP 660
Query: 661 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP 720
TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
Sbjct: 661 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP 720
Query: 721 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH 780
HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
Sbjct: 721 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH 780
Query: 781 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD 840
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
Sbjct: 781 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD 840
Query: 841 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL 900
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
Sbjct: 841 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL 900
Query: 901 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN 960
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
Sbjct: 901 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN 960
Query: 961 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN 1020
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
Sbjct: 961 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN 1020
Query: 1021 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV 1080
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
Sbjct: 1021 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV 1080
Query: 1081 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF 1140
KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
Sbjct: 1081 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF 1140
Query: 1141 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS 1200
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
Sbjct: 1141 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS 1200
Query: 1201 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL 1260
SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL
Sbjct: 1201 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL 1260
Query: 1261 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN 1320
PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN
Sbjct: 1261 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN 1320
Query: 1321 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI 1380
FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI
Sbjct: 1321 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI 1380
Query: 1381 ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS 1440
ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS
Sbjct: 1381 ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS 1440
Query: 1441 TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF 1500
TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF
Sbjct: 1441 TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF 1500
Query: 1501 ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSS 1560
ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSS
Sbjct: 1501 ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSS 1560
Query: 1561 HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN 1620
HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN
Sbjct: 1561 HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN 1620
Query: 1621 KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH 1680
KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH
Sbjct: 1621 KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH 1680
Query: 1681 KSTPISSSRRKSRKLAVNFGVSKPSE 1706
KSTPISSSRRKSRKLAVNFGVSKPSE
Sbjct: 1681 KSTPISSSRRKSRKLAVNFGVSKPSE 1706
>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
Length = 1693
Score = 3463 bits (8979), Expect = 0.0
Identities = 1693/1706 (99%), Positives = 1693/1706 (99%), Gaps = 13/1706 (0%)
Query: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
Sbjct: 1 MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI 60
Query: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
Sbjct: 61 FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE 120
Query: 121 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK 180
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
Sbjct: 121 TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK 180
Query: 181 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA 240
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
Sbjct: 181 IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA 240
Query: 241 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL 300
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
Sbjct: 241 PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL 300
Query: 301 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW 360
HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
Sbjct: 301 HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW 360
Query: 361 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET 420
FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET
Sbjct: 361 FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDET 420
Query: 421 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY 480
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
Sbjct: 421 EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY 480
Query: 481 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP 540
YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
Sbjct: 481 YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP 540
Query: 541 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM 600
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
Sbjct: 541 IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM 600
Query: 601 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP 660
CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
Sbjct: 601 CWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP 660
Query: 661 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP 720
TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
Sbjct: 661 TLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP 720
Query: 721 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH 780
HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
Sbjct: 721 HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH 780
Query: 781 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD 840
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
Sbjct: 781 YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD 840
Query: 841 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL 900
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
Sbjct: 841 SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL 900
Query: 901 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN 960
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
Sbjct: 901 IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN 960
Query: 961 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN 1020
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
Sbjct: 961 KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN 1020
Query: 1021 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV 1080
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
Sbjct: 1021 ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV 1080
Query: 1081 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF 1140
KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
Sbjct: 1081 KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF 1140
Query: 1141 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS 1200
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
Sbjct: 1141 EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS 1200
Query: 1201 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL 1260
SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL
Sbjct: 1201 SSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVL 1260
Query: 1261 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN 1320
PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN
Sbjct: 1261 PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIEN 1320
Query: 1321 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI 1380
FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI
Sbjct: 1321 FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQI 1380
Query: 1381 ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS 1440
ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS
Sbjct: 1381 ANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVS 1440
Query: 1441 TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF 1500
TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF
Sbjct: 1441 TPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALF 1500
Query: 1501 ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSS 1560
ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPT ANIMPSSS
Sbjct: 1501 ALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPT-------------ANIMPSSS 1547
Query: 1561 HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN 1620
HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN
Sbjct: 1548 HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFEN 1607
Query: 1621 KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH 1680
KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH
Sbjct: 1608 KEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHH 1667
Query: 1681 KSTPISSSRRKSRKLAVNFGVSKPSE 1706
KSTPISSSRRKSRKLAVNFGVSKPSE
Sbjct: 1668 KSTPISSSRRKSRKLAVNFGVSKPSE 1693
>gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens]
Length = 950
Score = 473 bits (1216), Expect = e-133
Identities = 264/683 (38%), Positives = 376/683 (55%), Gaps = 96/683 (14%)
Query: 1 MGVPKFYRWISERYP-----CLSEVVKEH---QIP-----------EFDNLYLDMNGIIH 41
MGVP F+RW+S +YP C+ E KE +IP EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
C+HP D ++D++ IF Y++ LF I++PR++ +MA+DGVAPRAKMNQQR RR
Sbjct: 61 PCTHPEDKPAPK--NEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
Query: 102 FRSAKEAEDKI-------KKAIEKGETLPTEA---RFDSNCITPGTEFMARLHEHLKYFV 151
FR++KE + ++ + KG LP E RFDSNCITPGTEFM L + L+Y++
Sbjct: 119 FRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYI 178
Query: 152 NMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIM 211
+++ D W+ +T+ S PGEGEHKIM++IR ++A+P+HDPNT HCL G DADLIM
Sbjct: 179 ADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM 238
Query: 212 LGLTSHEAHFSLLREEVRFGGKKTQRVCAP----------------------------EE 243
LGL +HE +F+++REE + K +C E
Sbjct: 239 LGLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 244 TTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHIN 303
F L L+++REY++ E ++ + F +D+ER IDDW+ M F VGNDF+PHLP L I
Sbjct: 299 GEFIFLRLNVLREYLERELTM--ASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIR 356
Query: 304 HDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFES 363
+A+ L Y ++ + GGY+ ESG++NL R + ++ + + + F + D F
Sbjct: 357 ENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRR 416
Query: 364 KVGNK--------------------YLNEAAGVAAEEARNYKEKK-KLKGQENSLCWTAL 402
+ K L ++ A N ++ +++ Q NS ++
Sbjct: 417 RQKEKRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSS--PSI 474
Query: 403 DKNE-----------GEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDF 451
N G + ++ + E E +D +K+ YY K VD + F
Sbjct: 475 SPNTSFTSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKF 534
Query: 452 LADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELG-KPFKP 510
YV+ + W+L YYY G SW WYYP+HYAPF SD I+ + FE G KPFKP
Sbjct: 535 RRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKP 594
Query: 511 FEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFID 570
EQL+ V PAAS N LP ++ LM++ DS II++YP DF DLNGK+ W+ V L+PF+D
Sbjct: 595 LEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVD 654
Query: 571 EKRLLEAMETCNHSLKKEERKRN 593
E+RL A+E L EE +RN
Sbjct: 655 ERRLRAALEEVYPDLTPEETRRN 677
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 38.1 bits (87), Expect = 0.074
Identities = 58/240 (24%), Positives = 87/240 (36%), Gaps = 30/240 (12%)
Query: 1384 IPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQ-IPPVSTP 1442
+PV++ Y P QP Y + PH+ + Q PSQ IPP + P
Sbjct: 96 VPVATTLPAAYATP-QPGTPVSPVQYAHLPHTFQFIGSSQYSGTYASFIPSQLIPPTANP 154
Query: 1443 VTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFAL 1502
VT S + S G P + Q + + G L P +E + +++
Sbjct: 155 VT--SAVASAAGATTPS----QRSQLEAYSTLLANMGSLSQTPGHKAEQQQQQQQQQ--- 205
Query: 1503 QQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSSHL 1562
QQ Q + PG I P PPP + Y + SS
Sbjct: 206 QQQHQHQQQQQQQQQQQQQQHLSRAPGLITPGSPPPAQQNQYVH---------ISSSPQN 256
Query: 1563 FGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQ-------FIPLQVTKKRVANK 1615
G P++PV P H T+ T+ + G P V Q F+P + TKK +++
Sbjct: 257 TGRTASPPAIPVHLHP-HQTMIPHTLTL--GPPSQVVMQYADSGSHFVPREATKKAESSR 313
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 38.1 bits (87), Expect = 0.074
Identities = 58/240 (24%), Positives = 87/240 (36%), Gaps = 30/240 (12%)
Query: 1384 IPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQ-IPPVSTP 1442
+PV++ Y P QP Y + PH+ + Q PSQ IPP + P
Sbjct: 96 VPVATTLPAAYATP-QPGTPVSPVQYAHLPHTFQFIGSSQYSGTYASFIPSQLIPPTANP 154
Query: 1443 VTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFAL 1502
VT S + S G P + Q + + G L P +E + +++
Sbjct: 155 VT--SAVASAAGATTPS----QRSQLEAYSTLLANMGSLSQTPGHKAEQQQQQQQQQ--- 205
Query: 1503 QQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSSHL 1562
QQ Q + PG I P PPP + Y + SS
Sbjct: 206 QQQHQHQQQQQQQQQQQQQQHLSRAPGLITPGSPPPAQQNQYVH---------ISSSPQN 256
Query: 1563 FGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQ-------FIPLQVTKKRVANK 1615
G P++PV P H T+ T+ + G P V Q F+P + TKK +++
Sbjct: 257 TGRTASPPAIPVHLHP-HQTMIPHTLTL--GPPSQVVMQYADSGSHFVPREATKKAESSR 313
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 37.4 bits (85), Expect = 0.13
Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 18/199 (9%)
Query: 1510 MNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSSHLFGSMPWG 1569
M PL + + P PP PA P + +GS ++ G N + S G P
Sbjct: 73 MESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAV-EDSFFQGITPVN 131
Query: 1570 PSVPVPGKPFH-HTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQA 1628
++ P H + ++ GT G+ H+Q P + A + AQ QA
Sbjct: 132 GTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPA-------QPAQPPQA 184
Query: 1629 TPVQTSQPDSSNIVKVSPRESSSASLKSSPI--AQPASSFQVETASQGHSISHHKSTPIS 1686
P Q + +S + S++A+ PI ++P+SS V A+ + S S
Sbjct: 185 QPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAVAAAAAAAAAS-------S 237
Query: 1687 SSRRKSRKLAVNFGVSKPS 1705
+S + +VN S PS
Sbjct: 238 ASSSWNTHQSVNAAWSAPS 256
>gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]
Length = 642
Score = 36.2 bits (82), Expect = 0.28
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 1564 GSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEA 1623
G P PS+ +P P GG P + FIP + +AN++ F +
Sbjct: 395 GLFPTSPSLAIPH------------PSVGGSPASL---FIPSPPSFLPLANQQLFRSPRR 439
Query: 1624 QSSQATPVQTSQPDSSNIVKVSPRESS----SASLKSSPIAQPASSFQVETASQGHSISH 1679
S + P + S+ S + R S S SSP+ PA S AS S+ H
Sbjct: 440 TSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRH 499
Query: 1680 HKSTPISSSRRKSRK 1694
+ P+ S R + K
Sbjct: 500 RR--PLISPARLNLK 512
>gi|7657385 CCR4-NOT transcription complex, subunit 2 [Homo sapiens]
Length = 540
Score = 35.8 bits (81), Expect = 0.37
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 1273 SGFNDNSVKYQQRKHDPHRKFKEECKSPK---------AECWSQKMSNKQPNSGIENFLA 1323
S ++D ++ Y Q PHR K+ SP A + Q+ + P G+ N
Sbjct: 35 SDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTP 94
Query: 1324 SLNISKENEVQSSHHGEP----PSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQ 1379
LN S Q H P P+ +P S + G IL ++ N ++H +
Sbjct: 95 QLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRG------ILPMNPRNMMNHSQVGQG 148
Query: 1380 IANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSM 1425
I IP +N GL S P ++ M K + + V SM
Sbjct: 149 IG--IPSRTNSMSSSGLGS-PNRSSPSIICMPKQQPSRQPFTVNSM 191
>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 [Homo
sapiens]
Length = 585
Score = 35.8 bits (81), Expect = 0.37
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 1524 SAVPPGTIPPAFPP----PTGWDHYGSNYALGAANIMPSSSHLFGSMPWGPSVPVPGKPF 1579
S VP +PP+ P P W G GA SS + +P GP+V PG
Sbjct: 44 SLVPTRPVPPSPAPLGTSPYSWSRSGPGRGGGAG-----SSRVPRGVP-GPAVCAPGSLL 97
Query: 1580 HHTLYSGTMPMAGGIPGGVHNQFI---PLQVTKKRVANKKNFENKEAQSSQATPVQ 1632
HH + TM A G F P Q +++ A K+ ++ SS+A P +
Sbjct: 98 HHASPTQTMAAADGSLFDNPRTFSRRPPAQASRQAKATKRKYQ----ASSEAPPAK 149
>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 [Homo
sapiens]
Length = 851
Score = 35.8 bits (81), Expect = 0.37
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 1524 SAVPPGTIPPAFPP----PTGWDHYGSNYALGAANIMPSSSHLFGSMPWGPSVPVPGKPF 1579
S VP +PP+ P P W G GA SS + +P GP+V PG
Sbjct: 44 SLVPTRPVPPSPAPLGTSPYSWSRSGPGRGGGAG-----SSRVPRGVP-GPAVCAPGSLL 97
Query: 1580 HHTLYSGTMPMAGGIPGGVHNQFI---PLQVTKKRVANKKNFENKEAQSSQATPVQ 1632
HH + TM A G F P Q +++ A K+ ++ SS+A P +
Sbjct: 98 HHASPTQTMAAADGSLFDNPRTFSRRPPAQASRQAKATKRKYQ----ASSEAPPAK 149
>gi|24308179 CTTNBP2 N-terminal like [Homo sapiens]
Length = 639
Score = 35.4 bits (80), Expect = 0.48
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 1598 VHNQFIPLQVTKKRVANKKNFENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSS 1657
V NQ +P + +A +K EN TPV P SS+ +SP ++S+SL SS
Sbjct: 368 VENQ-VPPREKSVALAQEKPVENGGCPVGIETPVPMPSPLSSSGSSLSPSSTASSSLTSS 426
Query: 1658 PIAQPA----------------SSFQVETASQGHSISH 1679
P + P SS+QV + H+ H
Sbjct: 427 PCSSPVLTKRLLGSSASSPGYQSSYQVGINQRFHAARH 464
>gi|239740955 PREDICTED: similar to c114 SLIT-like testicular protein
isoform 1 [Homo sapiens]
Length = 1635
Score = 34.7 bits (78), Expect = 0.82
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 1619 ENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSIS 1678
E++ + S Q PVQ S+ SPRE S+ + QP +V + GH +
Sbjct: 352 EHELSISEQQQPVQPSE---------SPREVESSPTQQETPGQPPEHHEVTVSPPGHHQT 402
Query: 1679 HHKSTPISSSRRKSRKLAV 1697
HH ++P S + +L +
Sbjct: 403 HHLASPSVSVKPPDVQLTI 421
>gi|239740953 PREDICTED: similar to c114 SLIT-like testicular protein
isoform 2 [Homo sapiens]
Length = 1700
Score = 34.7 bits (78), Expect = 0.82
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 1619 ENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSIS 1678
E++ + S Q PVQ S+ SPRE S+ + QP +V + GH +
Sbjct: 352 EHELSISEQQQPVQPSE---------SPREVESSPTQQETPGQPPEHHEVTVSPPGHHQT 402
Query: 1679 HHKSTPISSSRRKSRKLAV 1697
HH ++P S + +L +
Sbjct: 403 HHLASPSVSVKPPDVQLTI 421
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 34.7 bits (78), Expect = 0.82
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 28/193 (14%)
Query: 1485 PQCHSENEAKEKAALFALQQLGSLGMNFPLPSQVFANY----PSAVPPGTIPPAFPPPTG 1540
P+ H + E K +AL L ++ P+ Q N P++ G P F P G
Sbjct: 3167 PEKHPKKEEKISSALSVLGKVVGETHVDPIQLQALQNAIAGDPASFIGGQFLPYFIP--G 3224
Query: 1541 WDHYGSNYALGAAN--IMPSSSHLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGV 1598
+ Y + G P + P+GP++P +AG PG +
Sbjct: 3225 FASYFTPQLPGTVQGGYFPPVCGMESLFPYGPTMP--------------QTLAGLSPGAL 3270
Query: 1599 HNQFIPLQVTKKRVANKKNFENKEAQS----SQATPVQTSQPDSSNIVKVSPRESSSA-- 1652
Q+ Q + K+ + +E Q ++ + V++ QP +SN + + S+A
Sbjct: 3271 LQQYQQYQQNLQESLQKQQKQQQEQQQKPVQAKTSKVESDQPQNSNDASETKEDKSTATE 3330
Query: 1653 SLKSSPIAQPASS 1665
S K P + S+
Sbjct: 3331 STKEEPQLESKSA 3343
>gi|116325993 c114 SLIT-like testicular protein [Homo sapiens]
Length = 1700
Score = 34.7 bits (78), Expect = 0.82
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 1619 ENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSIS 1678
E++ + S Q PVQ S+ SPRE S+ + QP +V + GH +
Sbjct: 352 EHELSISEQQQPVQPSE---------SPREVESSPTQQETPGQPPEHHEVTVSPPGHHQT 402
Query: 1679 HHKSTPISSSRRKSRKLAV 1697
HH ++P S + +L +
Sbjct: 403 HHLASPSVSVKPPDVQLTI 421
>gi|110665701 leucine rich repeat containing 37A [Homo sapiens]
Length = 1700
Score = 34.7 bits (78), Expect = 0.82
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 1619 ENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSIS 1678
E++ + S Q PVQ S+ SPRE S+ + QP +V + GH +
Sbjct: 352 EHELSISEQQQPVQPSE---------SPREVESSPTQQETPGQPPEHHEVTVSPPGHHQT 402
Query: 1679 HHKSTPISSSRRKSRKLAV 1697
HH ++P S + +L +
Sbjct: 403 HHLASPSVSVKPPDVQLTI 421
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 34.3 bits (77), Expect = 1.1
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 1625 SSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKSTP 1684
+ ATP+ + P S++ +P +S S S+ P + S GH+ H ++P
Sbjct: 3883 TGHATPLPVTSPSSASTGHATPVPVTSTSSASTGDTTPLPVTNASSLSTGHATPLHVTSP 3942
Query: 1685 ISSSRRKSRKLAV 1697
S+SR + L V
Sbjct: 3943 SSASRGDTSTLPV 3955
Score = 32.3 bits (72), Expect = 4.0
Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 9/159 (5%)
Query: 1546 SNYALGAANIMPSSSHLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHN-QFIP 1604
S+ + G A +P +S S G ++P+P T P+ V P
Sbjct: 1511 SSASTGHATPLPVTS--LSSASTGDTMPLPVTSPSSASTGDTTPLPVTDASSVSTGHTTP 1568
Query: 1605 LQVTKKRVANKKNF------ENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSP 1658
L VT A+ + + A TP+ + P S++ +P + S S+
Sbjct: 1569 LPVTSPSSASTGHTTPLPVTDTSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTG 1628
Query: 1659 IAQPASSFQVETASQGHSISHHKSTPISSSRRKSRKLAV 1697
P + S GH+ H ++P S+S + L V
Sbjct: 1629 DTTPLPVTNASSLSTGHATPLHVTSPSSASTGHATPLPV 1667
>gi|62241026 doublesex and mab-3 related transcription factor 1 [Homo
sapiens]
Length = 373
Score = 34.3 bits (77), Expect = 1.1
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 20/172 (11%)
Query: 1521 NYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSSHLFGSMPWGPSVPVPGKPFH 1580
N P V T +F P+ + +Y + Y ++ ++ G + P+ G P
Sbjct: 199 NTPDLVSDSTYYSSFYQPSLFPYYNNLYNCPQYSMALAADSASGEV----GNPLGGSPVK 254
Query: 1581 HTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQATPVQTSQPDSSN 1640
++L P +PG NQ+ KN EN+ A SSQ + + P S
Sbjct: 255 NSLRGLPGPY---VPGQTGNQW-----------QMKNMENRHAMSSQYR-MHSYYPPPSY 299
Query: 1641 IVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKSTPISSSRRKS 1692
+ + P+ + S P A+ AS F ++ +S S+PIS+ K+
Sbjct: 300 LGQSVPQFFTFEDAPSYPEAR-ASVFSPPSSQDSGLVSLSSSSPISNKSTKA 350
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 33.9 bits (76), Expect = 1.4
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 29/156 (18%)
Query: 1513 PLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSSHLFGSMPWGPSV 1572
P P A PS +P PPA PPP A++ P + + W P
Sbjct: 120 PSPLSAAAVSPSKLPEDDEPPARPPPP-----------PPASVSPQAEPV-----WTPPA 163
Query: 1573 PVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQATPVQ 1632
P P P + P G G V L + V + + EN + + +
Sbjct: 164 PAPAAP----PSTPAAPKRRGSSGSVDETLFALPAASEPVI-RSSAENMDLKEQPGNTIS 218
Query: 1633 TSQPDSSNIVKVSPRESSSASLKS-SPIAQPASSFQ 1667
Q D +++ ++ASL S SP++ A+SF+
Sbjct: 219 AGQEDFPSVLL-----ETAASLPSLSPLS--AASFK 247
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 33.9 bits (76), Expect = 1.4
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 1615 KKNFENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPAS-SFQV----- 1668
+K E KE + S+ P +QP + ++ + S L+S P +QP S V
Sbjct: 455 EKESEEKEEKESEPQPEPVAQPQPQSQPQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTP 514
Query: 1669 -ETASQGHSISHHKSTPISS 1687
T QGH + K P+ S
Sbjct: 515 QVTQEQGHLLPERKDFPVES 534
>gi|187936946 hypothetical protein LOC84140 [Homo sapiens]
Length = 660
Score = 33.9 bits (76), Expect = 1.4
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 352 SEVFVDLKWFESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMIT 411
S+ FV K KV + N+ E+ ++ E++K++ +EN +D N +
Sbjct: 582 SDEFVSKKGQSGKVLEYFNNQETKSVTEDKESFNEEEKIEERENGEENYFIDTNSQDSYK 641
Query: 412 SKDNLEDETEDDDLFE 427
KD +E+E++ E
Sbjct: 642 EKDEANEESEEEKSVE 657
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.5 bits (75), Expect = 1.8
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 1623 AQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKS 1682
A S A+P +S SS+ S SSS+S SS + +SS ++S S S S
Sbjct: 2605 ASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2664
Query: 1683 TPISSS 1688
+ SSS
Sbjct: 2665 SSSSSS 2670
Score = 32.3 bits (72), Expect = 4.0
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 1620 NKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISH 1679
N A SS+A +S SS+ S SSS+S SS + +SS ++S S S
Sbjct: 2601 NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2660
Query: 1680 HKSTPISSS 1688
S+ SSS
Sbjct: 2661 SSSSSSSSS 2669
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 33.1 bits (74), Expect = 2.4
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1622 EAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHK 1681
E + Q PV S+ + S+IV+ +P SSS+S SS P+ + ++ S K
Sbjct: 2737 EIKPGQNNPVPVSETNESSIVERTPFSSSSSSKHSS----PSGTVAARVTPFNYNPSPRK 2792
Query: 1682 STPISSSRRKSR 1693
S+ S+S R S+
Sbjct: 2793 SSADSTSARPSQ 2804
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 33.1 bits (74), Expect = 2.4
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1622 EAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHK 1681
E + Q PV S+ + S+IV+ +P SSS+S SS P+ + ++ S K
Sbjct: 2737 EIKPGQNNPVPVSETNESSIVERTPFSSSSSSKHSS----PSGTVAARVTPFNYNPSPRK 2792
Query: 1682 STPISSSRRKSR 1693
S+ S+S R S+
Sbjct: 2793 SSADSTSARPSQ 2804
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 33.1 bits (74), Expect = 2.4
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 1622 EAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHK 1681
E + Q PV S+ + S+IV+ +P SSS+S SS P+ + ++ S K
Sbjct: 2737 EIKPGQNNPVPVSETNESSIVERTPFSSSSSSKHSS----PSGTVAARVTPFNYNPSPRK 2792
Query: 1682 STPISSSRRKSR 1693
S+ S+S R S+
Sbjct: 2793 SSADSTSARPSQ 2804
>gi|54112420 Cas-Br-M (murine) ecotropic retroviral transforming
sequence b [Homo sapiens]
Length = 982
Score = 33.1 bits (74), Expect = 2.4
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1522 YPSAVPPGTIPPAFPPPTGWDHYGSNYALGAAN----IMPSSSHLFGSMPWGPSVPVPGK 1577
+ SA P +PPA PP +GS+ ++ I P F ++P PS+P P
Sbjct: 769 FDSASDPVPLPPARPPTRDNPKHGSSLNRTPSDYDLLIPPLGEDAFDALP--PSLPPPPP 826
Query: 1578 PFHHTLYSGTMP 1589
P H+L + P
Sbjct: 827 PARHSLIEHSKP 838
>gi|46361987 hydroxyacylglutathione hydrolase-like isoform 1 [Homo
sapiens]
Length = 290
Score = 33.1 bits (74), Expect = 2.4
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 1490 ENEAKEKAALFALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYA 1549
E++ + ALF+ L G L Y S GT+PP G +H SN
Sbjct: 121 EDDCPDPPALFSGDALSVAGCGSCLEGSAQQMYQSLAELGTLPPETKVFCGHEHTLSNLE 180
Query: 1550 LGAANIMPSSSHLFGSMPWGPSVPV 1574
A + P + H+ + W + P+
Sbjct: 181 F-AQKVEPCNDHVRAKLSWAKARPL 204
>gi|88759339 aster-associated protein [Homo sapiens]
Length = 647
Score = 33.1 bits (74), Expect = 2.4
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 347 DREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEARNYK---EKKKLKGQENSLC----W 399
DR V +W E K N YL+E + E+ N + E+KK +E +L W
Sbjct: 419 DRADNIRAAVYQEWLEKK--NVYLHEMHRIKRIESENLRIQNEQKKAAKREEALASFEAW 476
Query: 400 TALDKNEGEMITSKDNLEDETE 421
A+ + E + I +K LE++ +
Sbjct: 477 KAMKEKEAKKIAAKKRLEEKNK 498
>gi|144226251 chitinase 3-like 1 [Homo sapiens]
Length = 383
Score = 32.7 bits (73), Expect = 3.1
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 112 IKKAIEKGETLPTEARFDSNCITPGTEF-MARLHEHLKYFVNMKISTDKSWQGVTIYFSG 170
IK+A + L A + +T + + +A++ +HL + M +W+G T G
Sbjct: 162 IKEAQPGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTT----G 217
Query: 171 HETPGEGEHKIMEFIRSEKAKPDHDPNTRHCL-----YGLDADLIMLGLTSHEAHFSLLR 225
H +P F E A PD NT + + G A +++G+ + F+L
Sbjct: 218 HHSP--------LFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLAS 269
Query: 226 EEVRFG 231
E G
Sbjct: 270 SETGVG 275
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 32.7 bits (73), Expect = 3.1
Identities = 46/174 (26%), Positives = 63/174 (36%), Gaps = 34/174 (19%)
Query: 1521 NYPSAVPPGTIP---PAFPPPTGWDHYGSNYALGAANIMPSSSHLFGSMPWGPSVPVPGK 1577
N PSA PP P P PPP AL N +S G+ P +P P
Sbjct: 284 NLPSAPPPANFPHVTPNLPPPP---------ALRPLNNASASPPGLGAQPLPGHLPSP-- 332
Query: 1578 PFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQATPVQTSQPD 1637
H + G GG+P G +A + + S+ A P++
Sbjct: 333 ---HAMGQG----MGGLPPGPEK--------GPTLAPSPHSLPPASSSAPAPPMRFPYSS 377
Query: 1638 SSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKSTPISSSRRK 1691
SS+ + SSS+S +SP PAS S HS S +S+ K
Sbjct: 378 SSSSSAAASSSSSSSSSSASPF--PASQ---ALPSYPHSFPPPTSLSVSNQPPK 426
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,187,744
Number of Sequences: 37866
Number of extensions: 3462559
Number of successful extensions: 11321
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 11080
Number of HSP's gapped (non-prelim): 307
length of query: 1706
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1590
effective length of database: 13,855,062
effective search space: 22029548580
effective search space used: 22029548580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.