XRN1 764

Name: XRN1	Sequence: fasta or formatted (1706aa)		NCBI GI: 110624792
Description: 5'-3' exoribonuclease 1 isoform a		Referenced in: RNases and RNA Stability
Other entries for this name: alt prot [1693aa] 5'-3' exoribonuclease 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 87 2 C cysteine 1.6 27 2 D aspartate 4.6 79 3 E glutamate 7.6 130 3 F phenylalanine 4.7 80 2 G glycine 5.8 99 2 H histidine 3.8 65 2 I isoleucine 5.6 95 3 K lysine 7.3 124 3 L leucine 7.8 133 2 M methionine 2.1 36 2 N asparagine 4.8 82 2 P proline 6.3 107 3 Q glutamine 4.7 80 2 R arginine 4.5 76 2 S serine 8.4 144 5 T threonine 4.0 69 2 V valine 6.3 108 2 W tryptophan 1.3 23 1 Y tyrosine 3.6 62 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 5'-3' exoribonuclease 1 isoform a XRN1 0.989 5'-3' exoribonuclease 1 isoform b XRN2 0.129 5'-3' exoribonuclease 2 ATXN1 0.004 ataxin 1 ATXN1 0.004 ataxin 1 CPEB3 0.003 cytoplasmic polyadenylation element binding protein ... TMEM201 0.003 transmembrane protein 201 isoform 1 CNOT2 0.003 CCR4-NOT transcription complex, subunit 2 DDX31 0.003 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... DDX31 0.003 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... CTTNBP2NL 0.003 CTTNBP2 N-terminal like LOC100294335 0.003 PREDICTED: similar to c114 SLIT-like testicular pro... LOC100294335 0.003 PREDICTED: similar to c114 SLIT-like testicular pro... ZFHX4 0.003 zinc finger homeodomain 4 LRRC37A2 0.003 c114 SLIT-like testicular protein LRRC37A 0.003 leucine rich repeat containing 37A MUC4 0.003 mucin 4 isoform a DMRT1 0.003 doublesex and mab-3 related transcription factor 1 [... RTN4 0.003 reticulon 4 isoform A PNN 0.003 pinin, desmosome associated protein FAM161A 0.003 hypothetical protein LOC84140 TNRC18 0.002 trinucleotide repeat containing 18 APC 0.002 adenomatous polyposis coli APC 0.002 adenomatous polyposis coli APC 0.002 adenomatous polyposis coli CBLB 0.002 Cas-Br-M (murine) ecotropic retroviral transforming ... HAGHL 0.002 hydroxyacylglutathione hydrolase-like isoform 1 [Hom... MAP9 0.002 aster-associated protein CHI3L1 0.002 chitinase 3-like 1 ATN1 0.002 atrophin-1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.