Guide to the Human Genome
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Name: LRRC37A2 Sequence: fasta or formatted (1700aa) NCBI GI: 116325993
Description:

c114 SLIT-like testicular protein

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         96           3
 C cysteine            1.2         21           2
 D aspartate           3.3         56           1
 E glutamate           9.2        156           4
 F phenylalanine       2.7         46           1
 G glycine             4.1         69           2
 H histidine           3.5         59           2
 I isoleucine          3.9         66           2
 K lysine              5.2         88           2
 L leucine             9.8        166           3
 M methionine          1.4         24           2
 N asparagine          4.0         68           3
 P proline            10.4        177           3
 Q glutamine           6.8        115           3
 R arginine            3.2         55           2
 S serine              9.4        159           3
 T threonine           8.5        145           2
 V valine              5.3         90           3
 W tryptophan          1.1         19           1
 Y tyrosine            1.5         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   c114 SLIT-like testicular protein 
LRRC37A               0.992   leucine rich repeat containing 37A 
LOC100294335          0.989   PREDICTED: similar to c114 SLIT-like testicular pro...
LOC100294335          0.942   PREDICTED: similar to c114 SLIT-like testicular pro...
LRRC37A3              0.927   leucine rich repeat containing 37, member A3 
LOC100288229          0.502   PREDICTED: hypothetical protein XP_002343606 
LRRC37B               0.212   leucine rich repeat containing 37B 
PRG4                  0.024   proteoglycan 4 isoform B 
PRG4                  0.024   proteoglycan 4 isoform A 
PRG4                  0.024   proteoglycan 4 isoform D 
PRG4                  0.024   proteoglycan 4 isoform C 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
MUC17                 0.019   mucin 17 
FAM186A               0.019   family with sequence similarity 186, member A [Homo...
LOC100294420          0.019   PREDICTED: similar to mucin 2 
DPCR1                 0.018   diffuse panbronchiolitis critical region 1 protein ...
LOC284297             0.018   hypothetical protein LOC284297 
MUC2                  0.018   mucin 2 precursor 
MUC6                  0.017   mucin 6, gastric 
FSCB                  0.017   fibrous sheath CABYR binding protein 
TTN                   0.016   titin isoform N2-A 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
LOC100294236          0.016   PREDICTED: similar to diffuse panbronchiolitis crit...
MDC1                  0.016   mediator of DNA-damage checkpoint 1 
YLPM1                 0.015   YLP motif containing 1 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform b 
KIAA0754              0.015   hypothetical protein LOC643314 
ZAN                   0.014   zonadhesin isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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