XRN1 762

Name: XRN1	Sequence: fasta or formatted (1693aa)		NCBI GI: 110624787
Description: 5'-3' exoribonuclease 1 isoform b		Referenced in: RNases and RNA Stability
Other entries for this name: alt prot [1706aa] 5'-3' exoribonuclease 1 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 85 2 C cysteine 1.6 27 2 D aspartate 4.6 78 3 E glutamate 7.7 130 3 F phenylalanine 4.7 80 2 G glycine 5.7 96 2 H histidine 3.8 64 2 I isoleucine 5.6 95 3 K lysine 7.3 124 3 L leucine 7.8 132 2 M methionine 2.1 36 2 N asparagine 4.8 81 2 P proline 6.3 107 3 Q glutamine 4.7 80 2 R arginine 4.5 76 2 S serine 8.4 143 5 T threonine 4.1 69 2 V valine 6.4 108 2 W tryptophan 1.3 22 1 Y tyrosine 3.5 60 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 5'-3' exoribonuclease 1 isoform b XRN1 0.997 5'-3' exoribonuclease 1 isoform a XRN2 0.130 5'-3' exoribonuclease 2 SMG7 0.004 SMG-7 homolog isoform 1 SMG7 0.004 SMG-7 homolog isoform 4 SMG7 0.004 SMG-7 homolog isoform 2 RTN4 0.004 reticulon 4 isoform A ATXN1 0.004 ataxin 1 ATXN1 0.004 ataxin 1 ZFHX4 0.004 zinc finger homeodomain 4 NACA 0.004 nascent polypeptide-associated complex alpha subuni... PCDH15 0.004 protocadherin 15 isoform CD1-4 precursor PCDH15 0.004 protocadherin 15 isoform CD1-10 precursor PCDH15 0.004 protocadherin 15 isoform CD1-9 precursor PCDH15 0.004 protocadherin 15 isoform CD1-8 precursor PCDH15 0.004 protocadherin 15 isoform CD1-7 precursor PCDH15 0.004 protocadherin 15 isoform CD1-6 precursor PCDH15 0.004 protocadherin 15 isoform CD1-2 precursor PCDH15 0.004 protocadherin 15 isoform CD1-1 precursor ATN1 0.003 atrophin-1 ATN1 0.003 atrophin-1 CAPRIN2 0.003 C1q domain containing 1 isoform 1 CAPRIN2 0.003 C1q domain containing 1 isoform 3 TMEM201 0.003 transmembrane protein 201 isoform 1 TCERG1 0.003 transcription elongation regulator 1 isoform 2 [Homo... TCERG1 0.003 transcription elongation regulator 1 isoform 1 [Homo... ZNF207 0.003 zinc finger protein 207 isoform b ZFP36L1 0.003 butyrate response factor 1 CREBBP 0.003 CREB binding protein isoform b CREBBP 0.003 CREB binding protein isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.