Guide to the Human Genome
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Name: LOC642132 Sequence: fasta or formatted (1615aa) NCBI GI: 239748171
Description:

PREDICTED: similar to roundabout 1 isoform 2

Referenced in:

Neurons

Other entries for this name:
alt prot [1562aa] PREDICTED: similar to roundabout 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7        109           4
 C cysteine            1.4         22           2
 D aspartate           5.6         91           2
 E glutamate           6.2        100           4
 F phenylalanine       2.2         36           2
 G glycine             7.2        117           2
 H histidine           1.9         31           1
 I isoleucine          4.1         66           2
 K lysine              4.4         71           2
 L leucine             5.8         94           3
 M methionine          1.7         28           1
 N asparagine          4.8         78           2
 P proline             8.9        143           5
 Q glutamine           5.3         86           2
 R arginine            5.9         96           3
 S serine              9.5        153           5
 T threonine           6.4        104           2
 V valine              7.6        123           3
 W tryptophan          1.2         19           1
 Y tyrosine            3.0         48           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.995   roundabout 1 isoform b 
ROBO1                 0.991   roundabout 1 isoform c 
ROBO1                 0.984   roundabout 1 isoform a 
LOC642132             0.952   PREDICTED: similar to roundabout 1 isoform 1 
ROBO1                 0.941   roundabout 1 isoform d 
ROBO2                 0.419   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.419   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO3                 0.285   roundabout, axon guidance receptor, homolog 3 
DSCAML1               0.064   Down syndrome cell adhesion molecule like 1 
DSCAM                 0.062   Down syndrome cell adhesion molecule isoform CHD2-42...
HMCN1                 0.059   hemicentin 1 
NEO1                  0.059   neogenin homolog 1 
CNTN5                 0.058   contactin 5 isoform short 
CNTN5                 0.058   contactin 5 isoform long 
CNTN4                 0.056   contactin 4 isoform a precursor 
HMCN2                 0.055   PREDICTED: hemicentin 2 
HMCN2                 0.055   PREDICTED: hemicentin 2 
HMCN2                 0.055   PREDICTED: hemicentin 2 
SDK2                  0.055   sidekick 2 
SDK1                  0.054   sidekick 1 
DCC                   0.054   deleted in colorectal carcinoma 
CNTN3                 0.054   contactin 3 
PXDN                  0.054   peroxidasin 
L1CAM                 0.053   L1 cell adhesion molecule isoform 3 precursor [Homo...
L1CAM                 0.053   L1 cell adhesion molecule isoform 2 precursor 
L1CAM                 0.053   L1 cell adhesion molecule isoform 1 precursor 
ROBO4                 0.051   roundabout homolog 4, magic roundabout 
CNTN6                 0.050   contactin 6 
PXDNL                 0.050   peroxidasin homolog-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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