Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PSORS1C2 Sequence: fasta or formatted (136aa) NCBI GI: 157041215
Description:

SPR1 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          5           1
 C cysteine            0.7          1           1
 D aspartate           7.4         10           2
 E glutamate           9.6         13           2
 F phenylalanine       0.7          1           1
 G glycine             7.4         10           1
 H histidine           2.2          3           1
 I isoleucine          2.2          3           1
 K lysine              0.7          1           1
 L leucine             8.1         11           2
 M methionine          0.7          1           1
 N asparagine          2.2          3           1
 P proline            28.7         39           3
 Q glutamine           2.9          4           1
 R arginine            7.4         10           1
 S serine              3.7          5           1
 T threonine           3.7          5           1
 V valine              2.9          4           1
 W tryptophan          4.4          6           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPR1 protein 
MLL4                  0.121   myeloid/lymphoid or mixed-lineage leukemia 4 
PRB1                  0.114   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.114   proline-rich protein BstNI subfamily 2 
PRR12                 0.114   proline rich 12 
FMNL1                 0.111   formin-like 1 
PRB3                  0.104   proline-rich protein BstNI subfamily 3 precursor [H...
CPSF6                 0.100   cleavage and polyadenylation specific factor 6, 68 ...
ESX1                  0.100   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
WBP11                 0.093   WW domain binding protein 11 
WASL                  0.093   Wiskott-Aldrich syndrome gene-like protein 
NHSL1                 0.090   NHS-like 1 
ENAH                  0.090   enabled homolog isoform a 
ENAH                  0.090   enabled homolog isoform b 
UBN2                  0.087   ubinuclein 2 
DGKK                  0.087   diacylglycerol kinase kappa 
GLTSCR1               0.087   glioma tumor suppressor candidate region gene 1 [Ho...
FMN1                  0.087   formin 1 
ZFHX4                 0.087   zinc finger homeodomain 4 
WAS                   0.087   Wiskott-Aldrich syndrome protein 
PRG4                  0.087   proteoglycan 4 isoform D 
PRG4                  0.087   proteoglycan 4 isoform C 
PRG4                  0.087   proteoglycan 4 isoform B 
PRG4                  0.087   proteoglycan 4 isoform A 
WASF2                 0.087   WAS protein family, member 2 
BRD4                  0.087   bromodomain-containing protein 4 isoform long 
SETD1B                0.087   SET domain containing 1B 
CRTC1                 0.083   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.083   mucoepidermoid carcinoma translocated 1 isoform 1 [...
LOC100291797          0.083   PREDICTED: hypothetical protein XP_002345651 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press