Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC647020 Sequence: fasta or formatted (272aa) NCBI GI: 239750893
Description:

PREDICTED: similar to acidic (leucine-rich) nuclear phosphoprotein 32 family, member B

Not currently referenced in the text

Other entries for this name:
alt prot {450aa} PREDICTED: similar to hCG1791241
alt mRNA {272aa} PREDICTED: similar to acidic (leucine-rich) nuclear phosphoprotei...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         10           2
 C cysteine            1.8          5           1
 D aspartate          13.2         36           3
 E glutamate          18.4         50           5
 F phenylalanine       2.6          7           1
 G glycine             7.0         19           2
 H histidine           1.1          3           1
 I isoleucine          3.3          9           1
 K lysine              7.4         20           2
 L leucine            11.0         30           2
 M methionine          0.7          2           1
 N asparagine          5.1         14           1
 P proline             4.4         12           1
 Q glutamine           2.2          6           1
 R arginine            2.9          8           1
 S serine              6.2         17           1
 T threonine           2.9          8           2
 V valine              4.0         11           1
 W tryptophan          0.7          2           1
 X unknown             0.4          1           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to acidic (leucine-rich) nuclear... 
LOC647020             1.000   PREDICTED: similar to acidic (leucine-rich) nuclear...
ANP32B                0.710   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
LOC647020             0.653   PREDICTED: similar to hCG1791241 
ANP32A                0.465   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
ANP32E                0.389   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32C                0.353   acidic nuclear phosphoprotein 32C 
ANP32E                0.343   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.237   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32D                0.224   acidic nuclear phosphoprotein 32D 
RPGR                  0.091   retinitis pigmentosa GTPase regulator isoform C [Hom...
NCL                   0.089   nucleolin 
MYT1L                 0.089   myelin transcription factor 1-like 
PELP1                 0.089   proline, glutamic acid and leucine rich protein 1 [...
UBTF                  0.087   upstream binding transcription factor, RNA polymera...
UBTF                  0.087   upstream binding transcription factor, RNA polymera...
UBTF                  0.087   upstream binding transcription factor, RNA polymerase...
YTHDC1                0.085   splicing factor YT521-B isoform 2 
YTHDC1                0.085   splicing factor YT521-B isoform 1 
CENPB                 0.083   centromere protein B 
ATAD2                 0.076   ATPase family, AAA domain containing 2 
MYT1                  0.076   myelin transcription factor 1 
WDR87                 0.074   NYD-SP11 protein 
TRIM44                0.074   DIPB protein 
KIAA1429              0.072   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.072   hypothetical protein LOC25962 isoform 2 
TPR                   0.070   nuclear pore complex-associated protein TPR 
NSBP1                 0.068   nucleosomal binding protein 1 
EIF5B                 0.068   eukaryotic translation initiation factor 5B 
VPRBP                 0.068   HIV-1 Vpr binding protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press