Guide to the Human Genome
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Name: DNAL1 Sequence: fasta or formatted (190aa) NCBI GI: 164607156
Description:

axonemal dynein light chain 1

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         14           1
 C cysteine            1.6          3           1
 D aspartate           3.7          7           1
 E glutamate          12.1         23           3
 F phenylalanine       1.6          3           1
 G glycine             4.7          9           1
 H histidine           1.1          2           1
 I isoleucine          7.9         15           1
 K lysine             12.1         23           2
 L leucine            13.7         26           1
 M methionine          2.6          5           1
 N asparagine          8.4         16           2
 P proline             3.7          7           2
 Q glutamine           1.1          2           1
 R arginine            2.6          5           1
 S serine              4.7          9           1
 T threonine           3.7          7           2
 V valine              3.7          7           1
 W tryptophan          2.1          4           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   axonemal dynein light chain 1 
LOC654258             0.110   PREDICTED: similar to leucine rich repeat containin...
NISCH                 0.110   nischarin 
LRRC48                0.110   leucine rich repeat containing 48 isoform b 
LRRC48                0.110   leucine rich repeat containing 48 isoform b 
LRRC48                0.110   leucine rich repeat containing 48 isoform a 
LRRC48                0.110   leucine rich repeat containing 48 isoform a 
LRRC49                0.110   leucine rich repeat containing 49 
PPP1R7                0.107   protein phosphatase 1, regulatory subunit 7 
LRGUK                 0.093   leucine-rich repeats and guanylate kinase domain con...
LRRC23                0.090   leucine rich repeat containing 23 isoform a 
LRRC23                0.090   leucine rich repeat containing 23 isoform a 
LRRC50                0.076   leucine rich repeat containing 50 
LRRC56                0.073   leucine rich repeat containing 56 
LRRC67                0.070   leucine rich repeat containing 67 
LRRC46                0.070   leucine rich repeat containing 46 
LRRCC1                0.065   sodium channel associated protein 2 isoform a [Homo...
LRRIQ1                0.056   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.056   leucine-rich repeats and IQ motif containing 1 isof...
SNRPA1                0.056   small nuclear ribonucleoprotein polypeptide A' [Homo...
LRRC8A                0.054   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.054   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.054   leucine rich repeat containing 8 family, member A [...
CEP97                 0.054   centrosomal protein 97kDa 
TBCEL                 0.051   tubulin folding cofactor E-like 
TBCEL                 0.051   tubulin folding cofactor E-like 
CEP110                0.051   centrosomal protein 110kDa 
LOC401387             0.048   leucine-rich repeat and death domain-containing pro...
LRFN1                 0.048   leucine rich repeat and fibronectin type III domain...
RABGGTA               0.045   Rab geranylgeranyltransferase alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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