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Search of human proteins with 155029552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
(534 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 1090 0.0
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 74 3e-13
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 57 6e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 57 6e-08
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 55 2e-07
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 55 2e-07
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 52 1e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 2e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 52 2e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 50 4e-06
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 49 2e-05
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 48 2e-05
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 47 3e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 47 3e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 47 4e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 47 4e-05
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 47 4e-05
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 47 4e-05
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 47 6e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 46 1e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 46 1e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 45 1e-04
gi|19913396 smoothelin isoform b [Homo sapiens] 45 2e-04
gi|19913394 smoothelin isoform c [Homo sapiens] 45 2e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 45 2e-04
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 45 2e-04
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 45 2e-04
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 45 2e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 45 2e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 44 3e-04
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 1090 bits (2819), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MISCAEQRSRQGEAGRGPAPVAPAFLPLWLPRGCSGILSVPAVAMHSAGTPRAESPMSRQ 60
MISCAEQRSRQGEAGRGPAPVAPAFLPLWLPRGCSGILSVPAVAMHSAGTPRAESPMSRQ
Sbjct: 1 MISCAEQRSRQGEAGRGPAPVAPAFLPLWLPRGCSGILSVPAVAMHSAGTPRAESPMSRQ 60
Query: 61 EKDAELDRRIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTPALLQPDGLTVTISQVP 120
EKDAELDRRIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTPALLQPDGLTVTISQVP
Sbjct: 61 EKDAELDRRIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTPALLQPDGLTVTISQVP 120
Query: 121 GEKRVVSRNWARGTCGPRVTNEMLEDEDAEDHGGTFCLGELVELAVTMENKAEGKRIVSE 180
GEKRVVSRNWARGTCGPRVTNEMLEDEDAEDHGGTFCLGELVELAVTMENKAEGKRIVSE
Sbjct: 121 GEKRVVSRNWARGTCGPRVTNEMLEDEDAEDHGGTFCLGELVELAVTMENKAEGKRIVSE 180
Query: 181 KPTRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQ 240
KPTRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQ
Sbjct: 181 KPTRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQ 240
Query: 241 EREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQKLQ 300
EREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQKLQ
Sbjct: 241 EREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQKLQ 300
Query: 301 PPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTR 360
PPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTR
Sbjct: 301 PPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTR 360
Query: 361 ETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPL 420
ETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPL
Sbjct: 361 ETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPL 420
Query: 421 DLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQR 480
DLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQR
Sbjct: 421 DLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQR 480
Query: 481 GAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGRC 534
GAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGRC
Sbjct: 481 GAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGRC 534
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 74.3 bits (181), Expect = 3e-13
Identities = 81/279 (29%), Positives = 107/279 (38%), Gaps = 40/279 (14%)
Query: 234 DYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGP 293
+Y +WKQERE+ID RL RHR G WRR WD +K +D G PA S R
Sbjct: 263 EYLRWKQEREKIDQERLQRHRKPTGQWRREWDAEKTDGMFKD-----GPVPAHEPSHR-- 315
Query: 294 RSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQ 353
Q PP P G+ A A+ + R R +A + + E +
Sbjct: 316 YDDQAWARPPKPP----TFGEFLSQHKAEASSRRRRKSSRPQAKAAPRAYSDHDDRWETK 371
Query: 354 EGSQS-TRET--PSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGE----------- 399
EG+ S ET P+ E + K++ M+ + APA P E +GE
Sbjct: 372 EGAASPAPETPQPTSPETSPKETPMQPPEI-PAPAHRPPEDEGEENEGEEDEEWEDISED 430
Query: 400 ------SVASTASSVPCSP-QEPDLAP--LDLSLGGAGIPGPRESGCVLGLRPGAQESPV 450
V P Q P+ AP + S G+P E + PG SP
Sbjct: 431 EEEEEIEVEEGDEEEPAQDHQAPEAAPTGIPCSEQAHGVPFSPEEPLLEPQAPGTPSSPF 490
Query: 451 SWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGE 489
S P G QP+ + EL P AG PGE
Sbjct: 491 SPPSG--HQPVSDWGEEVEL---NSPRTTHLAGALSPGE 524
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/47 (70%), Positives = 43/47 (91%)
Query: 58 SRQEKDAELDRRIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTP 104
S++EKDAELD+RI ALR+KN+AL+RRYQEI+EDR++AE G+AVT P
Sbjct: 9 SKEEKDAELDKRIEALRRKNEALIRRYQEIEEDRKKAELEGVAVTAP 55
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 56.6 bits (135), Expect = 6e-08
Identities = 96/375 (25%), Positives = 121/375 (32%), Gaps = 61/375 (16%)
Query: 188 QGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDL 247
+G G PGG PP + + G + + P G P E G
Sbjct: 491 RGARGEPGGVGPIGPPGERGAPGNRGFPGQ-DGLAGPKGAPGERG--------------P 535
Query: 248 ARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGE-GPARAGSRRGPRSHQKLQPPPLLP 306
+ LA + A GD RP + L L G G A + GP P P
Sbjct: 536 SGLAGPKGANGDPGRP-----GEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 590
Query: 307 DGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEE 366
+G GQ P V G K E + L G++G P
Sbjct: 591 GPQGARGQ---PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 647
Query: 367 EQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGG 426
A ++ EQG G P+ L P GP GE VP P L G
Sbjct: 648 GPAGERG--EQGAPG--PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVG---PRGE 700
Query: 427 AGIPGPRESGCVLGLRP--GAQESP-VSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAG 483
G PG R S GL+ G +P P+G+ P G Q +Q P + AG
Sbjct: 701 RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG-PAGPPGAQGPPGLQGMPGERGAAG 759
Query: 484 LPEPGEDRS--------------------------GKSGAQQGLAPRSRPTRGGSQRSRG 517
+ P DR G +GA P GS +RG
Sbjct: 760 IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARG 819
Query: 518 TAGVRRRTGRPGPAG 532
G R TG PGPAG
Sbjct: 820 APGERGETGPPGPAG 834
Score = 52.8 bits (125), Expect = 8e-07
Identities = 138/547 (25%), Positives = 172/547 (31%), Gaps = 76/547 (13%)
Query: 11 QGEAGRGPAPVAPAFLPLWLPRGCSGILSV--PAVAMHSAGTPRAESPMSRQEKDAELDR 68
+GE G +P L PRG G P A AG P A+ P Q E
Sbjct: 698 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 757
Query: 69 RIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTP-ALLQPDGLTVTISQV--PGEKRV 125
+A K ++ + E + + GG +T P P G +V PG
Sbjct: 758 AGIAGPKGDRGDVG---EKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 814
Query: 126 VSRNWA---RGTCGPRVTNEMLEDEDAEDHGGTFCLGELVELAVTMENKAEGKRIVSEKP 182
A RG GP A+ G GE E + A G + S P
Sbjct: 815 AGARGAPGERGETGPPGPAGFAGPPGADGQPGA--KGEQGEAGQKGDAGAPGPQGPSGAP 872
Query: 183 TRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSR----PVGEPPEAGWDYAQW 238
G+ G G R + PP + R G P S P G P +G D
Sbjct: 873 GPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP--PGSNGNPGPPGPPGPSGKDGP-- 928
Query: 239 KQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQK 298
K R A QG P + K D EGP G R
Sbjct: 929 KGARGDSGPPGRAGEPGLQGPAGPPGE----KGEPGDDGPSGAEGPPGPQGLAGQRGIVG 984
Query: 299 LQPP------PLLPDGKGRGGQASRPSVAPATGSKAR-GKERLTGRARRWDMKEDKEELE 351
L P LP G G+ P + G G LTG A
Sbjct: 985 LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGE----------P 1034
Query: 352 GQEGSQSTRETPSEEEQAQ-KQSGMEQGRLGS----APAASPALASPEGPKGESVASTAS 406
G+EGS P + A K E G +G+ P SP A P G +G+ + A
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ 1094
Query: 407 SVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNH 466
P P P G GI GP+ G R E+ G K H
Sbjct: 1095 G-PMGPSGP--------AGARGIQGPQ------GPRGDKGEAGEPGERGLK-------GH 1132
Query: 467 QAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTG 526
+ +Q P P P P D+ G SG PR P G G G+ G
Sbjct: 1133 RGFTGLQGLPGP------PGPSGDQ-GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1185
Query: 527 RPGPAGR 533
PGP GR
Sbjct: 1186 PPGPRGR 1192
Score = 46.6 bits (109), Expect = 6e-05
Identities = 50/182 (27%), Positives = 71/182 (39%), Gaps = 29/182 (15%)
Query: 365 EEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSL 424
+E+ Q G+ QG +G P GP G + A +P EP + +
Sbjct: 188 DEKAGGAQLGVMQGPMGPM--------GPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM 239
Query: 425 GGAGIPGPR-------ESGCVLGLRPG-AQESPVSWPEGSKQQP-----LGWSNHQAELE 471
G G PGP E+G +PG A E P+G++ P G H+
Sbjct: 240 GPRGPPGPPGKPGDDGEAG-----KPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 294
Query: 472 VQTCPEPQRGAGLPEPGEDRS-GKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGP 530
+ G+ GE S G++G+ + PR P G G AG R G+PGP
Sbjct: 295 LDGAKGEAGAPGVK--GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 352
Query: 531 AG 532
AG
Sbjct: 353 AG 354
Score = 46.2 bits (108), Expect = 7e-05
Identities = 73/272 (26%), Positives = 90/272 (33%), Gaps = 38/272 (13%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWD 342
GPA A RG QP P P G G A P A G+K G+ TG
Sbjct: 336 GPAGAAGARGNDG----QPGPAGPPGPV--GPAGGPGFPGAPGAK--GEAGPTGA----- 382
Query: 343 MKEDKEELEGQEGSQSTRETPSEEEQAQKQSGME--QGRLGSAPA----ASPALASPEGP 396
E +G G T +P A G + G GSA A +P P GP
Sbjct: 383 --RGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 439
Query: 397 KGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL-----RPGAQESPVS 451
G A+ EP +A G G PGP G + GA+ P
Sbjct: 440 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 499
Query: 452 ----WPEGSKQQP--LGWSNHQAELEVQTCPEPQRGAGLPEP-----GEDRSGKSGAQQG 500
P G + P G+ + P + +GL P R G+ G
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA 559
Query: 501 LAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
RP G Q G +G GRPGP G
Sbjct: 560 RGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPG 591
Score = 38.9 bits (89), Expect = 0.012
Identities = 75/296 (25%), Positives = 98/296 (33%), Gaps = 51/296 (17%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA------------- 328
+G A RGP Q + P P G G + P G+K
Sbjct: 374 KGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF 433
Query: 329 ---RGKERLTGRARRWDMKEDKEE--LEGQEGSQSTRETPSEE-EQAQKQSGMEQGRLGS 382
RG G K E + G +G Q + P Q E+G+ G+
Sbjct: 434 PGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA 493
Query: 383 APAASPALASPEGPKGESVASTASSVP---------CSPQEPDLAPLDLSLGGAGIPG-P 432
P P GP GE A P +P E + L G G PG P
Sbjct: 494 --RGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 551
Query: 433 RESGC--VLGL--RPG-----AQESPVSWP-EGSKQQPLGWSNHQAELEVQTCPEPQRGA 482
E G GL RPG + P P E + P G + + V P P+
Sbjct: 552 GEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGAN 611
Query: 483 GLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRS------RGTAGVRRRTGRPGPAG 532
G EPG ++G+ G R P + G + G AG R G PGP+G
Sbjct: 612 G--EPG--KAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 663
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 56.6 bits (135), Expect = 6e-08
Identities = 96/375 (25%), Positives = 121/375 (32%), Gaps = 61/375 (16%)
Query: 188 QGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDL 247
+G G PGG PP + + G + + P G P E G
Sbjct: 422 RGARGEPGGVGPIGPPGERGAPGNRGFPGQ-DGLAGPKGAPGERG--------------P 466
Query: 248 ARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGE-GPARAGSRRGPRSHQKLQPPPLLP 306
+ LA + A GD RP + L L G G A + GP P P
Sbjct: 467 SGLAGPKGANGDPGRP-----GEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP 521
Query: 307 DGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEE 366
+G GQ P V G K E + L G++G P
Sbjct: 522 GPQGARGQ---PGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPA 578
Query: 367 EQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGG 426
A ++ EQG G P+ L P GP GE VP P L G
Sbjct: 579 GPAGERG--EQGAPG--PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVG---PRGE 631
Query: 427 AGIPGPRESGCVLGLRP--GAQESP-VSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAG 483
G PG R S GL+ G +P P+G+ P G Q +Q P + AG
Sbjct: 632 RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG-PAGPPGAQGPPGLQGMPGERGAAG 690
Query: 484 LPEPGEDRS--------------------------GKSGAQQGLAPRSRPTRGGSQRSRG 517
+ P DR G +GA P GS +RG
Sbjct: 691 IAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARG 750
Query: 518 TAGVRRRTGRPGPAG 532
G R TG PGPAG
Sbjct: 751 APGERGETGPPGPAG 765
Score = 52.8 bits (125), Expect = 8e-07
Identities = 138/547 (25%), Positives = 172/547 (31%), Gaps = 76/547 (13%)
Query: 11 QGEAGRGPAPVAPAFLPLWLPRGCSGILSV--PAVAMHSAGTPRAESPMSRQEKDAELDR 68
+GE G +P L PRG G P A AG P A+ P Q E
Sbjct: 629 RGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGA 688
Query: 69 RIVALRKKNQALLRRYQEIQEDRRQAEQGGMAVTTP-ALLQPDGLTVTISQV--PGEKRV 125
+A K ++ + E + + GG +T P P G +V PG
Sbjct: 689 AGIAGPKGDRGDVG---EKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 745
Query: 126 VSRNWA---RGTCGPRVTNEMLEDEDAEDHGGTFCLGELVELAVTMENKAEGKRIVSEKP 182
A RG GP A+ G GE E + A G + S P
Sbjct: 746 AGARGAPGERGETGPPGPAGFAGPPGADGQPGA--KGEQGEAGQKGDAGAPGPQGPSGAP 803
Query: 183 TRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSR----PVGEPPEAGWDYAQW 238
G+ G G R + PP + R G P S P G P +G D
Sbjct: 804 GPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGP--PGSNGNPGPPGPPGPSGKDGP-- 859
Query: 239 KQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQK 298
K R A QG P + K D EGP G R
Sbjct: 860 KGARGDSGPPGRAGEPGLQGPAGPPGE----KGEPGDDGPSGAEGPPGPQGLAGQRGIVG 915
Query: 299 LQPP------PLLPDGKGRGGQASRPSVAPATGSKAR-GKERLTGRARRWDMKEDKEELE 351
L P LP G G+ P + G G LTG A
Sbjct: 916 LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGE----------P 965
Query: 352 GQEGSQSTRETPSEEEQAQ-KQSGMEQGRLGS----APAASPALASPEGPKGESVASTAS 406
G+EGS P + A K E G +G+ P SP A P G +G+ + A
Sbjct: 966 GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQ 1025
Query: 407 SVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNH 466
P P P G GI GP+ G R E+ G K H
Sbjct: 1026 G-PMGPSGP--------AGARGIQGPQ------GPRGDKGEAGEPGERGLK-------GH 1063
Query: 467 QAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTG 526
+ +Q P P P P D+ G SG PR P G G G+ G
Sbjct: 1064 RGFTGLQGLPGP------PGPSGDQ-GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1116
Query: 527 RPGPAGR 533
PGP GR
Sbjct: 1117 PPGPRGR 1123
Score = 46.6 bits (109), Expect = 6e-05
Identities = 50/182 (27%), Positives = 71/182 (39%), Gaps = 29/182 (15%)
Query: 365 EEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSL 424
+E+ Q G+ QG +G P GP G + A +P EP + +
Sbjct: 119 DEKAGGAQLGVMQGPMGPM--------GPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM 170
Query: 425 GGAGIPGPR-------ESGCVLGLRPG-AQESPVSWPEGSKQQP-----LGWSNHQAELE 471
G G PGP E+G +PG A E P+G++ P G H+
Sbjct: 171 GPRGPPGPPGKPGDDGEAG-----KPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPG 225
Query: 472 VQTCPEPQRGAGLPEPGEDRS-GKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGP 530
+ G+ GE S G++G+ + PR P G G AG R G+PGP
Sbjct: 226 LDGAKGEAGAPGVK--GESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 283
Query: 531 AG 532
AG
Sbjct: 284 AG 285
Score = 46.2 bits (108), Expect = 7e-05
Identities = 73/272 (26%), Positives = 90/272 (33%), Gaps = 38/272 (13%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWD 342
GPA A RG QP P P G G A P A G+K G+ TG
Sbjct: 267 GPAGAAGARGNDG----QPGPAGPPGPV--GPAGGPGFPGAPGAK--GEAGPTGA----- 313
Query: 343 MKEDKEELEGQEGSQSTRETPSEEEQAQKQSGME--QGRLGSAPA----ASPALASPEGP 396
E +G G T +P A G + G GSA A +P P GP
Sbjct: 314 --RGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGP 370
Query: 397 KGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL-----RPGAQESPVS 451
G A+ EP +A G G PGP G + GA+ P
Sbjct: 371 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 430
Query: 452 ----WPEGSKQQP--LGWSNHQAELEVQTCPEPQRGAGLPEP-----GEDRSGKSGAQQG 500
P G + P G+ + P + +GL P R G+ G
Sbjct: 431 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA 490
Query: 501 LAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
RP G Q G +G GRPGP G
Sbjct: 491 RGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPG 522
Score = 38.9 bits (89), Expect = 0.012
Identities = 75/296 (25%), Positives = 98/296 (33%), Gaps = 51/296 (17%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA------------- 328
+G A RGP Q + P P G G + P G+K
Sbjct: 305 KGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF 364
Query: 329 ---RGKERLTGRARRWDMKEDKEE--LEGQEGSQSTRETPSEE-EQAQKQSGMEQGRLGS 382
RG G K E + G +G Q + P Q E+G+ G+
Sbjct: 365 PGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA 424
Query: 383 APAASPALASPEGPKGESVASTASSVP---------CSPQEPDLAPLDLSLGGAGIPG-P 432
P P GP GE A P +P E + L G G PG P
Sbjct: 425 --RGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 482
Query: 433 RESGC--VLGL--RPG-----AQESPVSWP-EGSKQQPLGWSNHQAELEVQTCPEPQRGA 482
E G GL RPG + P P E + P G + + V P P+
Sbjct: 483 GEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGAN 542
Query: 483 GLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRS------RGTAGVRRRTGRPGPAG 532
G EPG ++G+ G R P + G + G AG R G PGP+G
Sbjct: 543 G--EPG--KAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSG 594
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 54.7 bits (130), Expect = 2e-07
Identities = 70/247 (28%), Positives = 93/247 (37%), Gaps = 59/247 (23%)
Query: 301 PPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTR 360
PPPL P RGG++ P ++P DMK ELE
Sbjct: 48 PPPLFPPPFFRGGRS--PLLSP-------------------DMKNLMLELE--------- 77
Query: 361 ETPSEEEQAQKQSGMEQGRLGS----APAASPALASPEGPKGESVASTASSVPCSPQEPD 416
QS QG LGS P P L GPKGE P P
Sbjct: 78 ---------TSQSPCMQGSLGSPGPPGPQGPPGLPGKTGPKGEKGELGRPGRKGRPGPPG 128
Query: 417 LAPLDLSLGGAGIPGPRESGCVLGLR--PGAQESPVSWPEGSKQQP--LGWSNHQAELEV 472
+ + +G G GPR LG+ PG++ P GSK P G + E +
Sbjct: 129 VPGMPGPIGWPGPEGPRGEKGDLGMMGLPGSR-----GPMGSKGYPGSRGEKGSRGE-KG 182
Query: 473 QTCPEPQRG-AGLP----EPGE-DRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTG 526
P+ ++G G P + GE G+ G P RP + G Q +G +GV G
Sbjct: 183 DLGPKGEKGFPGFPGMLGQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPG 242
Query: 527 RPGPAGR 533
+PGP+G+
Sbjct: 243 KPGPSGQ 249
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 54.7 bits (130), Expect = 2e-07
Identities = 70/247 (28%), Positives = 93/247 (37%), Gaps = 59/247 (23%)
Query: 301 PPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTR 360
PPPL P RGG++ P ++P DMK ELE
Sbjct: 58 PPPLFPPPFFRGGRS--PLLSP-------------------DMKNLMLELE--------- 87
Query: 361 ETPSEEEQAQKQSGMEQGRLGS----APAASPALASPEGPKGESVASTASSVPCSPQEPD 416
QS QG LGS P P L GPKGE P P
Sbjct: 88 ---------TSQSPCMQGSLGSPGPPGPQGPPGLPGKTGPKGEKGELGRPGRKGRPGPPG 138
Query: 417 LAPLDLSLGGAGIPGPRESGCVLGLR--PGAQESPVSWPEGSKQQP--LGWSNHQAELEV 472
+ + +G G GPR LG+ PG++ P GSK P G + E +
Sbjct: 139 VPGMPGPIGWPGPEGPRGEKGDLGMMGLPGSR-----GPMGSKGYPGSRGEKGSRGE-KG 192
Query: 473 QTCPEPQRG-AGLP----EPGE-DRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTG 526
P+ ++G G P + GE G+ G P RP + G Q +G +GV G
Sbjct: 193 DLGPKGEKGFPGFPGMLGQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPG 252
Query: 527 RPGPAGR 533
+PGP+G+
Sbjct: 253 KPGPSGQ 259
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 52.4 bits (124), Expect = 1e-06
Identities = 73/269 (27%), Positives = 95/269 (35%), Gaps = 41/269 (15%)
Query: 291 RGPRSHQKLQPPPLLPDGKGRGGQASRPSV--------APATGSKA----RGKERLTGRA 338
+GPR Q + PP P KG G P AP G + RG+E G
Sbjct: 318 KGPRGIQGITGPPGDPGPKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGAP 377
Query: 339 RRWDMKEDKEE-LEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPK 397
+ E + G EG R P E K +G G P+G +
Sbjct: 378 GPIGVGEPGQPGPRGPEGVPGERGLPGEGFPGPKGEKGSEGPTG-----------PQGLQ 426
Query: 398 GESVASTASSV-PCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGS 456
G S+ + P PQ P P S G GI GP G P Q P S E
Sbjct: 427 GLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQG--PAGQGLPGSKGEVG 484
Query: 457 KQQPLGWSNHQAELEVQTCPEPQRGAGLP----EPGED----RSGKSGAQQGLAPRSRPT 508
+ P G + VQ GLP PGED + G++G P P
Sbjct: 485 QMGPTG-PRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPG 543
Query: 509 RG-----GSQRSRGTAGVRRRTGRPGPAG 532
+G G + +G+ G + + G PGP G
Sbjct: 544 KGQPGPKGDEGKKGSKGNQGQRGLPGPEG 572
Score = 44.3 bits (103), Expect = 3e-04
Identities = 63/250 (25%), Positives = 88/250 (35%), Gaps = 37/250 (14%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWD 342
GP G + GP+ P P G G A + A G ARG E G+ +
Sbjct: 493 GPVGIGVQ-GPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPG--ARGPEGPPGKGQPGP 549
Query: 343 MKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVA 402
++ ++ G +G+Q R P E E G +G ++ P GPKG+
Sbjct: 550 KGDEGKK--GSKGNQGQRGLPGPEGPKG-----EPGIMGPFGMPGTSIPGPPGPKGDR-- 600
Query: 403 STASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLG 462
+P EP L+ G G+ GPR GL+ G V P G
Sbjct: 601 -GGPGIPGFKGEPGLS----IRGPKGVQGPRGPVGAPGLK-GDGYPGVPGPRG------- 647
Query: 463 WSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVR 522
P P GL G+ + +G S P G+Q +G G +
Sbjct: 648 ------------LPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQK 695
Query: 523 RRTGRPGPAG 532
G PGP G
Sbjct: 696 GLPGPPGPPG 705
Score = 42.7 bits (99), Expect = 8e-04
Identities = 54/204 (26%), Positives = 73/204 (35%), Gaps = 23/204 (11%)
Query: 351 EGQEGSQSTRETPSEEEQAQKQ---SGMEQGRLGSAPAASPALASPEGPKGESVASTASS 407
+G++G Q P + A + S E G++G P +GPKGE +
Sbjct: 454 QGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPG 513
Query: 408 VPCSPQEPDLAPLDLSLG-----------GAGIPGPRESGCVLGLRPGAQESPVSWPEGS 456
P P E A G G G PGP+ G + + + PEG
Sbjct: 514 QPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGP 573
Query: 457 KQQP--LG-WSNHQAELEVQTCPEPQRGA-GLP----EPGEDRSGKSGAQQGLAPRSRPT 508
K +P +G + + P+ RG G+P EPG G G Q P P
Sbjct: 574 KGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPG 633
Query: 509 RGGSQRSRGTAGVRRRTGRPGPAG 532
G G G R G PGP G
Sbjct: 634 LKGDGYP-GVPGPRGLPGPPGPMG 656
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 51.6 bits (122), Expect = 2e-06
Identities = 80/295 (27%), Positives = 94/295 (31%), Gaps = 67/295 (22%)
Query: 283 GPARAGSRRGPRSHQ-------KLQPP-PLLPDGKGRGGQASRPSVAPATGSKARGKERL 334
GPA +GPR ++ PP P P G+ A P+ AP T G + +
Sbjct: 899 GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP----GPQGI 954
Query: 335 TGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQ--SGMEQGRLGSAPAASPALAS 392
G+ L GQ G + P + KQ SG R P P LA
Sbjct: 955 AGQ-------RGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 1007
Query: 393 PEGPKGESVASTASSVP--------------CSPQEPDLAPLDLSLGGAGIPGPRESGCV 438
P G G A A P P P AP G G PGP
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP-----GAPGAPGPVGPAGK 1062
Query: 439 LGLR----PGAQESPVS-----------WPEGSK-----QQPLGWSNHQAELEVQTCPEP 478
G R P PV P G K Q G H+ +Q P P
Sbjct: 1063 SGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGP 1122
Query: 479 QRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
PGE G SGA PR P G+ G G+ G PGP GR
Sbjct: 1123 PGS-----PGEQ--GPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGR 1170
Score = 50.8 bits (120), Expect = 3e-06
Identities = 79/284 (27%), Positives = 94/284 (33%), Gaps = 41/284 (14%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWD 342
GP G GP+ + P P KG G P G E AR
Sbjct: 419 GPQGPGGPPGPKGNSG---EPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP 475
Query: 343 MKEDKEELEGQEGSQSTRETPSEEEQA-QKQSGMEQGRLGSA-PAASPALASPEGPKGES 400
G+ G +R P + A K E+G G A P SP A G G
Sbjct: 476 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP 535
Query: 401 VASTASSVPCSPQE------PDLAPLDLSLGGAGIPGPRESGCVLGL--------RPG-A 445
A + P SP P A D G G PG R V+G PG A
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKA 595
Query: 446 QESPVSWPEGSKQQPLGWSNHQAELEVQTCPEP-----QRGA----------GLPEPG-- 488
E V P G+ +G + E Q P P +RG GLP P
Sbjct: 596 GERGVPGPPGA----VGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP 651
Query: 489 EDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
+GK G Q P G++ RG G R G PGPAG
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAG 695
Score = 49.7 bits (117), Expect = 7e-06
Identities = 71/260 (27%), Positives = 91/260 (35%), Gaps = 35/260 (13%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKAR----GKERLTGRA 338
G A A G R Q P P KG G+ P TG+K G + G A
Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPA 463
Query: 339 RRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSA--PAASPALASPEGP 396
G+EG + R P E+G GS P A +A P+GP
Sbjct: 464 -------------GEEGKRGARGEPGPTGLPGPPG--ERGGPGSRGFPGAD-GVAGPKGP 507
Query: 397 KGESVASTASSVPCSPQE---PDLAPLDLSLGGAGIPG-PRESGCVLGLRPGAQESPVSW 452
GE + + SP E P A L + G G PG P G P Q+
Sbjct: 508 AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQD----- 562
Query: 453 PEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGS 512
+ P G + + V P P+ AG P +R G G + P + G+
Sbjct: 563 ---GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGER-GVPGPPGAVGPAGKDGEAGA 618
Query: 513 QRSRGTAGVRRRTGRPGPAG 532
Q G AG G GPAG
Sbjct: 619 QGPPGPAGPAGERGEQGPAG 638
Score = 45.1 bits (105), Expect = 2e-04
Identities = 69/261 (26%), Positives = 82/261 (31%), Gaps = 32/261 (12%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRW 341
+GPA GP P P GR G+A P TGS
Sbjct: 505 KGPAGERGSPGPAG------PKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP--------- 549
Query: 342 DMKEDKEELEGQEGSQSTRETPSEEEQA-------QKQSGMEQGRLGS-APAASPALASP 393
D K GQ+G P QA K + E G+ G P P
Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGP 609
Query: 394 EGPKGESVASTASSVPCSP--QEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVS 451
G GE+ A P P + + P S G G+PGP G +PG Q P
Sbjct: 610 AGKDGEAGAQGPPG-PAGPAGERGEQGPAG-SPGFQGLPGPAGPPGEAG-KPGEQGVPGD 666
Query: 452 WPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGG 511
G E VQ P P AG P G GA+ P G
Sbjct: 667 LGAPGPSGARGERGFPGERGVQGPPGP---AG-PRGANGAPGNDGAKGDAGAPGAPGSQG 722
Query: 512 SQRSRGTAGVRRRTGRPGPAG 532
+ +G G R G PGP G
Sbjct: 723 APGLQGMPGERGAAGLPGPKG 743
Score = 42.7 bits (99), Expect = 8e-04
Identities = 68/248 (27%), Positives = 80/248 (32%), Gaps = 56/248 (22%)
Query: 292 GPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKAR-------GKERLTGRARRWDMK 344
GP + L PP P +G G P A+G GK G A K
Sbjct: 182 GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG----K 237
Query: 345 EDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVAST 404
+ G G Q R P GM+ R S + A P GPKGE
Sbjct: 238 PGRPGERGPPGPQGARGLPG----TAGLPGMKGHRGFSGLDGAKGDAGPAGPKGE----- 288
Query: 405 ASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWS 464
P SP E +G G+PG R RPGA P G
Sbjct: 289 ----PGSPGENGAPG---QMGPRGLPGERG-------RPGAPG------------PAGAR 322
Query: 465 NHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRR 524
+ P P AG P G GA+ P+ G + S G GVR
Sbjct: 323 GNDGATGAAGPPGPTGPAGPP----GFPGAVGAKGEAGPQ------GPRGSEGPQGVRGE 372
Query: 525 TGRPGPAG 532
G PGPAG
Sbjct: 373 PGPPGPAG 380
Score = 42.7 bits (99), Expect = 8e-04
Identities = 72/264 (27%), Positives = 93/264 (35%), Gaps = 57/264 (21%)
Query: 279 LRGEGPARAGSRRGPRSHQKLQPPPL---------LPDGKGRGGQASRPSVAPATGSKAR 329
L GP+ A RG + +Q PP P G G A P + G A
Sbjct: 667 LGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG--AP 724
Query: 330 GKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPA 389
G + + G + K + G G + +P G + R + P P
Sbjct: 725 GLQGMPGERGAAGLPGPKGD-RGDAGPKGADGSP----------GKDGVRGLTGPIGPPG 773
Query: 390 LASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESP 449
A G KGES S P P AP G G PGP G PGA P
Sbjct: 774 PAGAPGDKGES----GPSGPAGPTGARGAP-----GDRGEPGPPGPAGFAG-PPGADGQP 823
Query: 450 VSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTR 509
G+K +P G + + + P P AG P P G GA
Sbjct: 824 -----GAKGEP-GDAGAKGDAGP---PGPAGPAGPPGP----IGNVGAP----------- 859
Query: 510 GGSQRSRGTAGVRRRTGRPGPAGR 533
G++ +RG+AG TG PG AGR
Sbjct: 860 -GAKGARGSAGPPGATGFPGAAGR 882
Score = 36.6 bits (83), Expect = 0.059
Identities = 60/257 (23%), Positives = 83/257 (32%), Gaps = 52/257 (20%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSK-ARGKERLTGRARR 340
+G A RG Q ++ P P G G A P G+K A G + G
Sbjct: 352 KGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAP-- 409
Query: 341 WDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGM-EQGRLGSAPAASPA-LASPEGPKG 398
G G Q P + + + +G G+ P + P GP G
Sbjct: 410 -----GFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAG 464
Query: 399 ESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQ 458
E A P G G+PGP G R V+ P+G
Sbjct: 465 EEGKRGARGEP---------------GPTGLPGPPGERGGPGSRGFPGADGVAGPKG--- 506
Query: 459 QPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSG--AQQGLAPRSRPTRGGSQRSR 516
P +RG+ P + G++G + GL P G S
Sbjct: 507 -----------------PAGERGSPGPAGPKGSPGEAGRPGEAGL-----PGAKGLTGSP 544
Query: 517 GTAGVRRRTGRPGPAGR 533
G+ G +TG PGPAG+
Sbjct: 545 GSPGPDGKTGPPGPAGQ 561
Score = 32.0 bits (71), Expect = 1.5
Identities = 54/214 (25%), Positives = 66/214 (30%), Gaps = 44/214 (20%)
Query: 364 SEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEP-------D 416
SE Q+ +G+E + + P A P G G P P P +
Sbjct: 99 SESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGN 158
Query: 417 LAPL------DLSLGGAGIPGPRESGCVLGL-----RPGAQ----------ESPVSWPEG 455
AP + S GG +PGP GL PG Q E S P G
Sbjct: 159 FAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG 218
Query: 456 SKQQPL--------GWSNHQAELEVQTCPEPQRGAGLPE----PG----EDRSGKSGAQQ 499
+ P G + + P PQ GLP PG SG GA+
Sbjct: 219 PRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKG 278
Query: 500 GLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
P GS G G G PG GR
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGR 312
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 51.6 bits (122), Expect = 2e-06
Identities = 67/257 (26%), Positives = 85/257 (33%), Gaps = 34/257 (13%)
Query: 280 RGE-GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRA 338
RGE GP R GPR Q + P +P G G PS G ++ G
Sbjct: 143 RGERGPK---GRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGL- 198
Query: 339 RRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKG 398
++K L Q G P Q G + G + P P P GP G
Sbjct: 199 ------DEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIG 252
Query: 399 ESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQ 458
P EP +G AG PG R PGA P
Sbjct: 253 SRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGF-------PGAPGLP--------- 296
Query: 459 QPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRP---TRGGSQRS 515
G H+ ++ P+ + GA + +G GA L PR P R G Q +
Sbjct: 297 ---GLKGHRGHKGLEG-PKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGA 352
Query: 516 RGTAGVRRRTGRPGPAG 532
G G G+PGP G
Sbjct: 353 PGQRGAHGMPGKPGPMG 369
Score = 48.9 bits (115), Expect = 1e-05
Identities = 79/274 (28%), Positives = 100/274 (36%), Gaps = 40/274 (14%)
Query: 284 PARAGSRR-----GPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA---------- 328
P AG R GP Q L PP P G+ G P A G
Sbjct: 659 PGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGE 718
Query: 329 RGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGM--EQGRLGS-APA 385
RG+ +TG M +G +GS TP + Q GM E+G G+ P
Sbjct: 719 RGEPGITGLPGEKGMAGGHGP-DGPKGSPGPSGTPGDTGPPGLQ-GMPGERGIAGTPGPK 776
Query: 386 ASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGA 445
+G +G + A +P P A G G PGPR L PG+
Sbjct: 777 GDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAG---PTGEKGEPGPRG----LVGPPGS 829
Query: 446 QESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGA-GLP-EPGEDRSGKSGAQQGLA- 502
+ +P S E +G++ Q P+ Q G G P EPG+ S QGLA
Sbjct: 830 RGNPGSRGENGPTGAVGFAGPQG-------PDGQPGVKGEPGEPGQKGDAGSPGPQGLAG 882
Query: 503 ---PRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
P G + RGT G TG PG AGR
Sbjct: 883 SPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGR 916
Score = 41.2 bits (95), Expect = 0.002
Identities = 60/256 (23%), Positives = 79/256 (30%), Gaps = 27/256 (10%)
Query: 303 PLLPDG-KGRGGQASRPSVAPATGSKA----RGKERLTGRARRWDMKEDKEE--LEGQEG 355
PL P G +G G+ P + G K G + G D L+G G
Sbjct: 706 PLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPG 765
Query: 356 SQSTRETPSE--------EEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASS 407
+ TP E+ A+ +G + R P P A P G KGE
Sbjct: 766 ERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVG 825
Query: 408 VPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQ 467
P S P + G G GP+ G++ G P + P G +
Sbjct: 826 PPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVK-GEPGEPGQKGDAGSPGPQGLAGSP 884
Query: 468 AELEVQTCPEPQRGAGLPEPGEDRS-----------GKSGAQQGLAPRSRPTRGGSQRSR 516
P + G G P G +GA P P + G R
Sbjct: 885 GPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLR 944
Query: 517 GTAGVRRRTGRPGPAG 532
G G R G GPAG
Sbjct: 945 GDPGSHGRVGDRGPAG 960
Score = 40.8 bits (94), Expect = 0.003
Identities = 62/250 (24%), Positives = 85/250 (34%), Gaps = 33/250 (13%)
Query: 292 GPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELE 351
GP + + PP P G G+ P GS G G +K + +
Sbjct: 249 GPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSP--GARGFPGAPGLPGLKGHRGH-K 305
Query: 352 GQEGSQSTRETPSEEEQAQKQSGM-EQGRLGSAPAASPALASPEGPKGESVASTASSVPC 410
G EG + P + +A M G LG P P GP+G A +P
Sbjct: 306 GLEGPKGEVGAPGSKGEAGPTGPMGAMGPLG--PRGMPGERGRLGPQGAPGQRGAHGMPG 363
Query: 411 SPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQ--------PLG 462
P + PL + G +G PG G++ A + PEG + Q P+G
Sbjct: 364 KPGP--MGPLGIP-GSSGFPGNP------GMKGEAGPTGARGPEGPQGQRGETGPPGPVG 414
Query: 463 WSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVR 522
+ P + G P G SG P P G Q S G G+R
Sbjct: 415 SPGLPGAIGTDGTPGAKGPTGSP-------GTSGPPGSAGPPGSP---GPQGSTGPQGIR 464
Query: 523 RRTGRPGPAG 532
+ G PG G
Sbjct: 465 GQPGDPGVPG 474
Score = 40.4 bits (93), Expect = 0.004
Identities = 75/295 (25%), Positives = 98/295 (33%), Gaps = 52/295 (17%)
Query: 282 EGPARAGSRRGPRSHQKLQP-----PPLLPDGKGRGGQASRPSV----APATGSKARGKE 332
EGP G R P SH ++ PP P KG G+ +P PA + RG
Sbjct: 938 EGPP--GLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIV 995
Query: 333 RLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALAS 392
+ G+ M L G G+ + P+ + G + P P
Sbjct: 996 GMPGQRGERGMPG----LPGPAGTPG-KVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEG 1050
Query: 393 PEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLR--PGAQESPV 450
P G G A +P A L S G G PGP + G R PG++ P+
Sbjct: 1051 PAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSR-GPI 1109
Query: 451 SWPEGSKQQPL-------------------GWSNHQAELEVQTCPEP------QRGAGLP 485
P + ++ L G H+ +Q P P Q AG+P
Sbjct: 1110 GPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIP 1169
Query: 486 EPGEDR--------SGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P R SGK G L P P GS G G G PGP G
Sbjct: 1170 GPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPG 1224
Score = 39.7 bits (91), Expect = 0.007
Identities = 54/195 (27%), Positives = 70/195 (35%), Gaps = 19/195 (9%)
Query: 352 GQEGSQSTRETPSEEEQ----AQKQSGMEQGRLGSAPAASPALASPE-GPKGESVASTAS 406
G+EG + R P ++ + +G GS P A E GP G S +
Sbjct: 498 GEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQ 557
Query: 407 SVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGS---KQQP--L 461
P P EP L G G+ GP LG PG P P GS + QP +
Sbjct: 558 GDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGA-PGEDGRP--GPPGSIGIRGQPGSM 614
Query: 462 GWSNHQAELEVQTCPEPQRGAGLP----EPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRG 517
G + P AG+P PG+D G+ G + P G Q G
Sbjct: 615 GLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKD--GEVGPSGPVGPPGLAGERGEQGPPG 672
Query: 518 TAGVRRRTGRPGPAG 532
G + G PGP G
Sbjct: 673 PTGFQGLPGPPGPPG 687
Score = 37.4 bits (85), Expect = 0.035
Identities = 65/258 (25%), Positives = 82/258 (31%), Gaps = 49/258 (18%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSK-ARGKERLTGRARRW 341
GP +RGPR PP +G G P G K A+G+ G +
Sbjct: 495 GPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSS--- 551
Query: 342 DMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESV 401
G +GSQ P E G+ R +P + PEG G
Sbjct: 552 ----------GPKGSQGDPGRPGEP-------GLPGAR---GLTGNPGVQGPEGKLGPLG 591
Query: 402 ASTASSVPCSPQ------EPDLAPLDLSLGGAGIPG-PRESGCVLGLRPGAQESPVSWPE 454
A P P +P L G +G PG P E+G G+ PG + +P E
Sbjct: 592 APGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNA-GV-PGQRGAPGKDGE 649
Query: 455 GSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQR 514
P+G E Q P P GLP P P GG
Sbjct: 650 VGPSGPVGPPGLAGERGEQGPPGPTGFQGLP----------------GPPGPPGEGGKPG 693
Query: 515 SRGTAGVRRRTGRPGPAG 532
+G G G GP G
Sbjct: 694 DQGVPGDPGAVGPLGPRG 711
Score = 35.8 bits (81), Expect = 0.10
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 481 GAGLPEPGEDRSGKSGAQQGLAP-----RSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G G G R G+ G + GL P R RP G S+G G R GRPGP G
Sbjct: 101 GGGNTNFGRGRKGQKG-EPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRG 156
Score = 35.8 bits (81), Expect = 0.10
Identities = 104/444 (23%), Positives = 132/444 (29%), Gaps = 108/444 (24%)
Query: 103 TPALLQPDGLTVTISQVPGEKRVVSRNWARGTCGPRVTNEMLEDEDAEDHGGTFC----- 157
TP P GL +PGE+ + GT GP+ + ++ AE G
Sbjct: 751 TPGDTGPPGL----QGMPGERGIA------GTPGPKGDRGGIGEKGAEGTAGNDGARGLP 800
Query: 158 --LGELVELAVTMENKAEGKRIVSEKPTRARNQGIEGSPGGRVTRSPPTQVAISSDSARK 215
LG T E G R + P G G+PG R P V +
Sbjct: 801 GPLGPPGPAGPTGEKGEPGPRGLVGPP------GSRGNPGSRGENGPTGAVGFAGPQGPD 854
Query: 216 GSWEPWSRPVGEPPEAGWDYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQD 275
G +P + GEP E G +GD P A S
Sbjct: 855 G--QPGVK--GEPGEPG-----------------------QKGDAGSPGPQGLAGSP--- 884
Query: 276 CSQLRGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLT 335
GP G + + Q PP G G+ P A A G E
Sbjct: 885 -------GPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGE--- 934
Query: 336 GRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGS-APAASPALASPE 394
G+EG R P GR+G PA P +
Sbjct: 935 ---------------PGKEGPPGLRGDPGSH-----------GRVGDRGPAGPPGGPGDK 968
Query: 395 GPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPE 454
G GE P P A G G+PG R + GL PG +P
Sbjct: 969 GDPGED------GQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGL-PGPAGTP----- 1016
Query: 455 GSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEP----GEDRS-GKSGAQQGLAPRSRPTR 509
K P G + + P G P P G D + G+ GA R P
Sbjct: 1017 -GKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGP 1075
Query: 510 GGSQRSRGTAGVRRRTGRPGPAGR 533
G S+G G G PG AG+
Sbjct: 1076 AGLPGSQGAPGTPGPVGAPGDAGQ 1099
Score = 33.9 bits (76), Expect = 0.38
Identities = 65/264 (24%), Positives = 86/264 (32%), Gaps = 43/264 (16%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDG-KGRGGQASRPSVAPATG-SKARGKERLTGRARR 340
GP A +RG +P P+ P G G G P + G + ARG E G+ R
Sbjct: 348 GPQGAPGQRGAHGMPG-KPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQ-RG 405
Query: 341 WDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGS-APAASPALASPEGPKGE 399
G G+ T TP + G GS + P A P G G
Sbjct: 406 ETGPPGPVGSPGLPGAIGTDGTPGAK-----------GPTGSPGTSGPPGSAGPPGSPGP 454
Query: 400 SVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWP-EGSKQ 458
++ + P +P + G G PGP + P+ P E K+
Sbjct: 455 QGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPH-----------GIQGPIGPPGEEGKR 503
Query: 459 QPLGWSNHQAELEVQTCPEPQRGA----------GLPEPGEDRSGKSGAQQGLAPRSRPT 508
P G P +RGA GLP P + G+ G P+
Sbjct: 504 GPRG----DPGTVGPPGPVGERGAPGNRGFPGSDGLPGP-KGAQGERGPVGSSGPKGSQG 558
Query: 509 RGGSQRSRGTAGVRRRTGRPGPAG 532
G G G R TG PG G
Sbjct: 559 DPGRPGEPGLPGARGLTGNPGVQG 582
Score = 29.6 bits (65), Expect = 7.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 493 GKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G G + P+ RP G Q G GV + G PGP G
Sbjct: 138 GSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPG 177
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 50.4 bits (119), Expect = 4e-06
Identities = 76/269 (28%), Positives = 89/269 (33%), Gaps = 36/269 (13%)
Query: 291 RGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA-RGKERLTGRARRWDMKEDKEE 349
RGP P P KG GG P +A GS RG+ G A
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGF----PGAPG 816
Query: 350 LEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVP 409
G+ G + R P E+ + G+ GS PA P P+G KGE +
Sbjct: 817 QNGEPGGKGERGAPGEKGEGGPP-GVAGPPGGSGPAGPPG---PQGVKGERGSPGGPGAA 872
Query: 410 CSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL-----RPGAQESP-VSWPEGSKQQPLGW 463
P L S G G PGP S G GA SP VS P+G QP G
Sbjct: 873 GFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQP-GE 931
Query: 464 SNHQAELEVQTCPEP--------------------QRGAGLPEPGEDRSGKSGAQQGLAP 503
P P RG+ P+ + SGK GA
Sbjct: 932 KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGE 991
Query: 504 RSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
R P G GTAG R G PG G
Sbjct: 992 RGPPGPQGLPGLAGTAGEPGRDGNPGSDG 1020
Score = 48.1 bits (113), Expect = 2e-05
Identities = 73/276 (26%), Positives = 91/276 (32%), Gaps = 43/276 (15%)
Query: 292 GPRSHQKLQPPPL------LPDGKGRGGQASRPSVAPATGSK-------ARGKERLTGRA 338
GP+ H Q PP P GKG G A P G++ A G L G A
Sbjct: 372 GPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGA 431
Query: 339 RRWDMKEDKEEL--EGQEGSQSTRETPSEE-EQAQKQSGMEQGRLGSAPAA----SPALA 391
K E G+ G P + E + S E G G AA +P
Sbjct: 432 GEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFR 491
Query: 392 SPEGPKG-----ESVASTASSVPCSPQ----EPDLAPLDLSLGGAGIPG----PRESGCV 438
P GP G + P P+ EP + G G+PG P G
Sbjct: 492 GPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDG-- 549
Query: 439 LGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQ 498
+PG P S E + P G S + + V P P+ G P +R G G
Sbjct: 550 ---KPGP---PGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG 603
Query: 499 QGLAPRSRPTRG--GSQRSRGTAGVRRRTGRPGPAG 532
P G G G G + TG PGP G
Sbjct: 604 PQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639
Score = 45.8 bits (107), Expect = 1e-04
Identities = 69/257 (26%), Positives = 85/257 (33%), Gaps = 44/257 (17%)
Query: 284 PARAGSRRGPRSHQKLQPPPLLPDGK-GRGGQASRPSVAPATGSKA-------RGKERLT 335
P + G R GP P P P GK G G P G K +G + L
Sbjct: 590 PGKNGERGGPGG-----PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLP 644
Query: 336 GRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEG 395
G + K G +G P + A L AP A P G
Sbjct: 645 GTGGP-PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGG-AGPPG 702
Query: 396 PKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEG 455
P+G A+ P + P L + GG G PGP+ G PGA P
Sbjct: 703 PEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPG-GPGADGVPGKDGPR 761
Query: 456 SKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRS 515
P+G P AG +PG+ G+ GA P G
Sbjct: 762 GPTGPIG---------------PPGPAG--QPGD--KGEGGA---------PGLPGIAGP 793
Query: 516 RGTAGVRRRTGRPGPAG 532
RG+ G R TG PGPAG
Sbjct: 794 RGSPGERGETGPPGPAG 810
Score = 41.2 bits (95), Expect = 0.002
Identities = 65/259 (25%), Positives = 89/259 (34%), Gaps = 27/259 (10%)
Query: 284 PARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATG------SKARGKERLTGR 337
P R + +GP+ + PP +P G G +P + G S G + + +
Sbjct: 95 PTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQ 154
Query: 338 ARRWDMKEDKEE--LEGQEGSQSTRETPSEE-EQAQKQSGMEQGRLGSAPAASPALASPE 394
+D+K L G G P S G G P P A P
Sbjct: 155 YDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQG--PPGEPGQAGPS 212
Query: 395 GPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPE 454
GP G A P P A D G G PG R G++ A +
Sbjct: 213 GPPGPPGA-------IGPSGP--AGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMK 263
Query: 455 GSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRS-GKSGAQQGLAPRSRPTRGGSQ 513
G + G+ E P + GLP GE+ + G G + R RP G+
Sbjct: 264 GHR----GFDGRNGEKGETGAPGLKGENGLP--GENGAPGPMGPRGAPGERGRPGLPGAA 317
Query: 514 RSRGTAGVRRRTGRPGPAG 532
+RG G R G+PGP G
Sbjct: 318 GARGNDGARGSDGQPGPPG 336
Score = 41.2 bits (95), Expect = 0.002
Identities = 86/364 (23%), Positives = 111/364 (30%), Gaps = 65/364 (17%)
Query: 189 GIEGSPGGR---------------VTRSPPTQV-AISSDSARKGSWEPWSRPV-GEPPEA 231
GI GSPGG+ R PP A + R G+ EP GEP
Sbjct: 387 GINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPR 446
Query: 232 GWDYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRR 291
G ER + + + + G P + G A R
Sbjct: 447 G--------ERGEAGIPGVPGAKGEDGKDGSP-------------GEPGANGLPGAAGER 485
Query: 292 GPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKAR-GKERLTGRARRWDMKEDKEEL 350
G + P +P KG G+ P A G+ G++ + G M
Sbjct: 486 GAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGS---- 541
Query: 351 EGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPC 410
G GS P +Q +SG S P P + GPKG A +
Sbjct: 542 PGGPGSDGKPGPPG----SQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNG--- 594
Query: 411 SPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAEL 470
GG G PGP+ G G Q P G + G Q
Sbjct: 595 ------------ERGGPGGPGPQGPPGKNG-ETGPQGPPGPTGPGGDKGDTGPPGPQGLQ 641
Query: 471 EVQTCPEPQRGAGLP-EPG-EDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRP 528
+ P G P EPG + +G GA G P G G G+R G P
Sbjct: 642 GLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPP 701
Query: 529 GPAG 532
GP G
Sbjct: 702 GPEG 705
Score = 40.8 bits (94), Expect = 0.003
Identities = 67/267 (25%), Positives = 85/267 (31%), Gaps = 40/267 (14%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSK----ARGKERLTGRA 338
GP+ + + GP P P G G A +P + G++ A G + G
Sbjct: 894 GPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT 953
Query: 339 RRWDMKEDKEELEGQEGSQSTRETPSE-----EEQAQKQSGMEQGRLGSAPAASPALASP 393
L G G R +P E +G+ R P P LA
Sbjct: 954 -------GARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGT 1006
Query: 394 EGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWP 453
G G +P L D S GG G G S PGA +P
Sbjct: 1007 AGEPGRDG---------NPGSDGLPGRDGSPGGKGDRGENGS-------PGAPGAPGHPG 1050
Query: 454 EGSKQQPLGWSNHQAE---LEVQTCPEPQRGAGLPEPGEDR-----SGKSGAQQGLAPRS 505
P G S + E P P G P P R +G+ GA R
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRG 1110
Query: 506 RPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P G+ S G AG + G PGPAG
Sbjct: 1111 FPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Score = 38.5 bits (88), Expect = 0.016
Identities = 63/270 (23%), Positives = 87/270 (32%), Gaps = 49/270 (18%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA----RGKERLTGRA 338
G A RG + P P +G G++ +P +G + +G L G A
Sbjct: 948 GIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTA 1007
Query: 339 RRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAAS--PALASPEGP 396
G++G+ + P + + + AP A P P GP
Sbjct: 1008 GE----------PGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGP 1057
Query: 397 KGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGS 456
G+S S P P AG PGP S PG Q E
Sbjct: 1058 AGKS-GDRGESGPAGP--------------AGAPGPAGSRGA----PGPQGPRGDKGETG 1098
Query: 457 KQQPLGWSNHQA-----ELEVQTCPEPQRGA-GLPEPGEDRS--------GKSGAQQGLA 502
++ G H+ P Q+GA G P P R GK G
Sbjct: 1099 ERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPG 1158
Query: 503 PRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P P G++ RG+ G G+PGP G
Sbjct: 1159 PIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
Score = 37.0 bits (84), Expect = 0.045
Identities = 85/356 (23%), Positives = 108/356 (30%), Gaps = 61/356 (17%)
Query: 189 GIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDLA 248
G+ G PG PP S GS + P GEP +AG
Sbjct: 168 GLAGYPGPAGPPGPPGPPGTSGHPGSPGS-PGYQGPPGEPGQAG---------------- 210
Query: 249 RLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRR--GPRSHQKLQPPPLLP 306
G P + + +D R P R G R GP + P P
Sbjct: 211 -------PSGPPGPPGAIGPSGPAGKDGESGR---PGRPGERGLPGPPGIKGPAGIPGFP 260
Query: 307 DGKGRGGQASRPSVAPATGSKA-RGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSE 365
KG G R TG+ +G+ L G G G R P E
Sbjct: 261 GMKGHRGFDGRNGEKGETGAPGLKGENGLPGE-------------NGAPGPMGPRGAPGE 307
Query: 366 EEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSP-QEPDLAPLDLSL 424
+ G R S P GP G + P SP + ++ P S
Sbjct: 308 RGRPGLP-GAAGARGNDGARGSDGQPGPPGPPG------TAGFPGSPGAKGEVGPAG-SP 359
Query: 425 GGAGIPGPRESGCVLGLRPGAQESP----VSWPEGSKQQ--PLGWSNHQAELEVQTCPEP 478
G G PG R G GAQ P ++ G K + P G + + P P
Sbjct: 360 GSNGAPGQRGEPGPQG-HAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGP 418
Query: 479 QRGAGLP--EPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G P G GK+GA+ PR G G G + G PG G
Sbjct: 419 AGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPG 474
Score = 36.6 bits (83), Expect = 0.059
Identities = 58/235 (24%), Positives = 75/235 (31%), Gaps = 46/235 (19%)
Query: 309 KGRGGQASRPSVAPATGSKAR----GKERLTGRARRWDMKEDKEE--LEGQEGSQSTRET 362
+G G P +A G R G + L GR K D+ E G G+
Sbjct: 992 RGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGP 1051
Query: 363 PSEEEQAQKQSGM-EQGRLGSA----PAASPALASPEGPKGESVASTASSVPCSPQEPDL 417
P A K E G G A PA S P+GP+G+ +
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGER----------- 1100
Query: 418 APLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPE 477
G AGI G R PG +P S +Q +G P
Sbjct: 1101 -------GAAGIKGHRGF-------PGNPGAPGSPGPAGQQGAIGSPG----------PA 1136
Query: 478 PQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
RG P + G SG + P G + S G+ G + G PGP G
Sbjct: 1137 GPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPG 1191
Score = 31.6 bits (70), Expect = 1.9
Identities = 38/151 (25%), Positives = 52/151 (34%), Gaps = 33/151 (21%)
Query: 382 SAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL 441
+AP P P+GPKG+ P P + + G GIPG
Sbjct: 93 TAPTRPPNGQGPQGPKGD------------PGPPGIPGRN---GDPGIPG---------- 127
Query: 442 RPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGL 501
+PG+ SP P + P G N+ + + GL +G G
Sbjct: 128 QPGSPGSP-GPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGL-------AGYPGPAGPP 179
Query: 502 APRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P P G S G+ G + G PG AG
Sbjct: 180 GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAG 210
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 48.5 bits (114), Expect = 2e-05
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 27/252 (10%)
Query: 278 QLRGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVA---PATGSKARGKERL 334
Q RG G + + ++G + ++ P +G + +P PA G+ R R
Sbjct: 49 QRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSRS 108
Query: 335 TGRARRWDMKEDKEELEGQEGSQS----TRETPSEEEQAQKQSGMEQGR-LGSAPAASPA 389
+ A + ++ +EE S T + ++ Q + +G Q R G +P+A
Sbjct: 109 SSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAAGTGQRRGSGCSPSADQQ 168
Query: 390 LASPEGPKGESVASTASSVPCSP--QEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQE 447
A + +TA+ VP S + L L AG G R G++
Sbjct: 169 RAQDREEE-----ATAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRR---------GSRS 214
Query: 448 SPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRP 507
SP P G Q G S + Q + + A P+ +G +G ++G A P
Sbjct: 215 SPSRQPAGGTGQRRG-SRSSPSADQQRAQDREEEAAQPQ--RRPAGGTGQRRGTAAAPVP 271
Query: 508 TRGGSQRSRGTA 519
T GG+ + RGTA
Sbjct: 272 TTGGTGQRRGTA 283
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 48.1 bits (113), Expect = 2e-05
Identities = 74/277 (26%), Positives = 102/277 (36%), Gaps = 66/277 (23%)
Query: 284 PARAGSR--RGPRSHQKLQPPPLLPDGK-GRGGQASRPSVAPATGSKAR-GKERLTGRAR 339
P +AG R RGP + P G GR G P VA +G GK+ G
Sbjct: 261 PGKAGDRGERGPEGFRG-------PKGDLGRPGPKGTPGVAGPSGEPGMPGKDGQNG--- 310
Query: 340 RWDMKEDKEELEGQEGSQSTRETPSEE-------------EQAQKQSGMEQGRLGSA-PA 385
L+GQ+G P E+ + +K G LG A P+
Sbjct: 311 -------VPGLDGQKGEAGRNGAPGEKGPNGLPGLPGRAGSKGEKGERGRAGELGEAGPS 363
Query: 386 ASPALASPEGPKGE--SVASTASSVPCSPQEPDLAP-------LDLSLGGAGIPGPRESG 436
P + G GE S+ PQ P AP S+G G+PGP+
Sbjct: 364 GEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDPGLPGPQ--- 420
Query: 437 CVLGLRPGAQESPVSWPEGSK-QQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKS 495
GLR + G K Q + S+ + + P +GL P G+S
Sbjct: 421 ---GLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGP-----SGLVGP----KGES 468
Query: 496 GAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G++ L P+ G+Q GT+GV+ G PGP G
Sbjct: 469 GSRGELGPK------GTQGPNGTSGVQGVPGPPGPLG 499
Score = 42.4 bits (98), Expect = 0.001
Identities = 72/273 (26%), Positives = 87/273 (31%), Gaps = 42/273 (15%)
Query: 279 LRGEGPARAGSRRGPRSHQKLQP-PPLLPDGKGRGGQASRPSVAPATGSK-ARGKERLTG 336
L GE A AG++R P PP P G G+A P + G K A GK G
Sbjct: 15 LLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPG 74
Query: 337 RARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLG----------SAPAA 386
A + + L G++G + P E G G S P
Sbjct: 75 EAGLPGLP-GVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPG 133
Query: 387 SPALASPEGPKGESVASTASSVPCSPQEPDLAP---LDLSLGGAGIPGPRESGCVLGLRP 443
L P GP G P P P + P DL PGP P
Sbjct: 134 GIGLRGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGP----------P 183
Query: 444 GAQESPVSWPEGSKQQPLGWSNHQAELEV---QTCPEPQRGAGLPEPGEDRSGKSGAQQG 500
G P + P G+ Q E+ + P P AGLP G G Q
Sbjct: 184 GPPGMP------GFKGPTGYKGEQGEVGKDGEKGDPGPPGPAGLP-------GSVGLQGP 230
Query: 501 LAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
R P G RG G R G PG G+
Sbjct: 231 RGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGK 263
Score = 38.1 bits (87), Expect = 0.020
Identities = 65/262 (24%), Positives = 89/262 (33%), Gaps = 42/262 (16%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKAR----------GKE 332
GP RGP L P LP G G P V P + + G
Sbjct: 130 GPPGGIGLRGPPGPSGL---PGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPP 186
Query: 333 RLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLG-SAPAASPALA 391
+ G K ++ E+ G++G + P +G+ G +G P L
Sbjct: 187 GMPGFKGPTGYKGEQGEV-GKDGEKGDPGPPGP-------AGLP-GSVGLQGPRGLRGLP 237
Query: 392 SPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESP-V 450
P GP G+ P P P A G G GP+ LG RPG + +P V
Sbjct: 238 GPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGD---LG-RPGPKGTPGV 293
Query: 451 SWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRG 510
+ P G P + Q G + + +G++GA P P
Sbjct: 294 AGPSGEPGMP--------------GKDGQNGVPGLDGQKGEAGRNGAPGEKGPNGLPGLP 339
Query: 511 GSQRSRGTAGVRRRTGRPGPAG 532
G S+G G R R G G AG
Sbjct: 340 GRAGSKGEKGERGRAGELGEAG 361
Score = 33.1 bits (74), Expect = 0.65
Identities = 62/258 (24%), Positives = 94/258 (36%), Gaps = 33/258 (12%)
Query: 279 LRGE-GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGR 337
LRG+ G G GP+ Q + LP KG G + V P S +RG+ G
Sbjct: 422 LRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPSGL--VGPKGESGSRGELGPKGT 479
Query: 338 ARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPK 397
+G G+ + P Q + P AS + +
Sbjct: 480 -------------QGPNGTSGVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIR 526
Query: 398 ---GESVASTASSVPCSPQEPDLAPLDLSLGG-AGIPGPRESGCVLGLRPGAQESP-VSW 452
G ++ + + ++P LAP + G AG PGP +G PGA+ P
Sbjct: 527 ELCGGMISEQIAQLAAHLRKP-LAPGSIGRPGPAGPPGPPGPPGSIG-HPGARGPPGYRG 584
Query: 453 PEGSKQQPLGWSNHQAELEVQTC-------PEPQRGAGLPE--PGEDRSGKSGAQQGLAP 503
P G P G +Q + + PE +G P+ PG + G+ GA P
Sbjct: 585 PTGELGDP-GPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGP 643
Query: 504 RSRPTRGGSQRSRGTAGV 521
P G+ ++GT G+
Sbjct: 644 PGDPGLPGAIGAQGTPGI 661
Score = 30.4 bits (67), Expect = 4.2
Identities = 66/255 (25%), Positives = 90/255 (35%), Gaps = 55/255 (21%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRW 341
+GP A RG + + P LP +G G A G K G + + G
Sbjct: 393 QGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGPGGAAGPK--GDQGIAG----- 445
Query: 342 DMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESV 401
+ L G +G PS + +SG +G LG P+G +G +
Sbjct: 446 -----SDGLPGDKGELG----PSGLVGPKGESG-SRGELG-----------PKGTQGPNG 484
Query: 402 ASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPL 461
S VP P PL L G G+PG + G +PG V E S+Q+
Sbjct: 485 TSGVQGVPGPP-----GPLGLQ-GVPGVPG------ITG-KPG-----VPGKEASEQRIR 526
Query: 462 GWSNHQAELEVQTCPEPQRGAGLPEPGEDRS-GKSGAQQGLAPRSRPTRGGSQRSRGTAG 520
++ Q A L +P S G+ G P P G +RG G
Sbjct: 527 ELCGGMISEQIA-----QLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGARGPPG 581
Query: 521 VRRRTGR---PGPAG 532
R TG PGP G
Sbjct: 582 YRGPTGELGDPGPRG 596
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 47.4 bits (111), Expect = 3e-05
Identities = 94/361 (26%), Positives = 127/361 (35%), Gaps = 66/361 (18%)
Query: 188 QGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDL 247
+G++G PG R P Q+ D G P G P G + R +D
Sbjct: 924 EGMKGKPGARGLPGPRGQLGPEGDEGPMG-------PPGAPGLEGQPGRKGFPGRPGLDG 976
Query: 248 ARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQKLQPPPLLPD 307
+ GD RP + + L GE P G +G R + PP +P
Sbjct: 977 V-----KGEPGDPGRPGPV--GEQGFMGFIGLVGE-PGIVG-EKGDRG---MMGPPGVPG 1024
Query: 308 GKGR-------GGQASRPSVAPATGSKARGKERLTG-RARRWDMKEDKEELEGQEGSQST 359
KG GG + P +RG + G + RR D G++GS+
Sbjct: 1025 PKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGP--AGEQGSRGL 1082
Query: 360 RETPSEEEQAQK--QSGM--EQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEP 415
+ P + + + Q G+ E+G LGS P + P GP G + P PQ P
Sbjct: 1083 KGPPGPQGRPGRPGQQGVAGERGHLGS--RGFPGIPGPSGPPG-TKGLPGEPGPQGPQGP 1139
Query: 416 DLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESP-VSWPEGSKQQ--PLGWSNHQAELEV 472
+G G GP+ PGA P + G K PLG Q +
Sbjct: 1140 --------IGPPGEMGPKGP-------PGAVGEPGLPGEAGMKGDLGPLGTPGEQGLI-- 1182
Query: 473 QTCPEPQRGAGLPEPG-EDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPA 531
QRG EPG E SG G R P G +G G+ G PGP
Sbjct: 1183 -----GQRG----EPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPP 1233
Query: 532 G 532
G
Sbjct: 1234 G 1234
Score = 40.8 bits (94), Expect = 0.003
Identities = 68/267 (25%), Positives = 91/267 (34%), Gaps = 56/267 (20%)
Query: 284 PARAGSRR--GPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKAR-GKERLTGRARR 340
P G R GP+ + + P KG+ G+A P G + G + GR
Sbjct: 1384 PGHPGPRGWPGPKGSKGAEGP------KGKQGKAGAPGRRGVQGLQGLPGPRGVVGR--- 1434
Query: 341 WDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGES 400
+G EG P + QA +Q EQG G P GP G+
Sbjct: 1435 ----------QGLEGIAGPDGLPGRDGQAGQQG--EQGDDGDP--------GPMGPAGKR 1474
Query: 401 VASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQP 460
+ +P + P G G PG R + GL PG Q P GSK QP
Sbjct: 1475 GNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGL-PGNQGEP-----GSKGQP 1528
Query: 461 --------------LGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSR 506
G ++ + P+ GL + G G L P
Sbjct: 1529 GDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLM----GKEGIVGPLGILGPSGL 1584
Query: 507 PTRGGSQRSRGTAGVRRRTGRPGPAGR 533
P G + SRG G++ G PGP GR
Sbjct: 1585 PGPKGDKGSRGDWGLQGPRGPPGPRGR 1611
Score = 38.5 bits (88), Expect = 0.016
Identities = 71/293 (24%), Positives = 105/293 (35%), Gaps = 58/293 (19%)
Query: 292 GPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKAR-------GKERLTGRARRWDMK 344
GP+ Q PP KG G P + G K G++ L G+ ++
Sbjct: 1132 GPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLE 1191
Query: 345 EDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGS-APAASPALASPEGPKGES--- 400
D + G +G + R P + + ++ ++G +G P P + GP+G+S
Sbjct: 1192 GDSGPM-GPDGLKGDRGDPGPDGEHGEKG--QEGLMGEDGPPGPPGVTGVRGPEGKSGKQ 1248
Query: 401 -VASTASSVPCSPQEPDLAPLDL--SLGGAGIPGPRESGCVLGL-----RPGAQESP-VS 451
+ + L + + G G PGP+ S LG R GAQ P ++
Sbjct: 1249 GEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLA 1308
Query: 452 WPEGSKQ--QPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRS----------------- 492
+G K PLG + E Q E + G P P DR
Sbjct: 1309 GYDGHKGIVGPLGPPGPKGEKGEQG--EDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYP 1366
Query: 493 ---------GKSGAQQGL----APRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
GK G QQG PR P GS+ + G G + + G PG G
Sbjct: 1367 GQEGVQGLRGKPG-QQGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRG 1418
Score = 37.0 bits (84), Expect = 0.045
Identities = 47/190 (24%), Positives = 62/190 (32%), Gaps = 23/190 (12%)
Query: 351 EGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPC 410
EG +G R P Q + ++G +G P +P L G KG
Sbjct: 924 EGMKGKPGARGLPGPRGQLGPEG--DEGPMG--PPGAPGLEGQPGRKG------------ 967
Query: 411 SPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQ--PLGWSNHQA 468
P P L + G G PGP +G E + +G + P G +
Sbjct: 968 FPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKG 1027
Query: 469 ELEVQTCPEPQRGAGLPEP-----GEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRR 523
+ P G P P G GA+ PR G Q SRG G
Sbjct: 1028 SMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPG 1087
Query: 524 RTGRPGPAGR 533
GRPG G+
Sbjct: 1088 PQGRPGRPGQ 1097
Score = 35.0 bits (79), Expect = 0.17
Identities = 45/152 (29%), Positives = 57/152 (37%), Gaps = 19/152 (12%)
Query: 381 GSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLG 440
GS P P L P GPKG+ +P P P L + + G G PGP + + G
Sbjct: 616 GSTPF--PLLMGPPGPKGD------CGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPG 667
Query: 441 LRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQG 500
PGA +G K P G S +A + +G P P R G G
Sbjct: 668 -PPGA--------KGQKGDP-GLSPGKAHDGAKGDMGLPGLSGNPGP-PGRKGHKGYPGP 716
Query: 501 LAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
+ G + S G G R G PGP G
Sbjct: 717 AGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVG 748
Score = 34.3 bits (77), Expect = 0.29
Identities = 93/384 (24%), Positives = 123/384 (32%), Gaps = 99/384 (25%)
Query: 189 GIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRP-VGEPPEAGWDYAQWKQEREQIDL 247
G+ G PG R R PP P+ P + PP A K ++ L
Sbjct: 643 GLPGIPGARGPRGPP---------------GPYGNPGLPGPPGA-------KGQKGDPGL 680
Query: 248 ARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGE--GPARAGSR--RGPRSH--QKLQP 301
+ H A+GD P L G P R G + GP H ++ QP
Sbjct: 681 SPGKAHDGAKGDMGLP--------------GLSGNPGPPGRKGHKGYPGPAGHPGEQGQP 726
Query: 302 -PPLLPDGKGRGGQASRPSVAPATGSK-ARGKERLTGRARRWDMKEDKEELEGQEGSQST 359
P P KG G+ P G K +RG L G L G GS
Sbjct: 727 GPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPG-------------LFGLPGSDGE 773
Query: 360 RETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAP 419
R P ++G++G P + GP G +P P P L
Sbjct: 774 RGLPGVPG--------KRGKMGM--PGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIG 823
Query: 420 LDLSLGGAGIPGPRESGCVLGL--------------RPGAQESP-VSWPEGS-------- 456
LG G PGP+ ++G PG P +GS
Sbjct: 824 DLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPG 883
Query: 457 ---KQQPLGWSNHQAELEVQTCPEPQRGAG-LPEPG----EDRSGKSGAQQGLAPRSRPT 508
K PLG + + P P+ G + PG E GK GA+ PR +
Sbjct: 884 ARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLG 943
Query: 509 RGGSQRSRGTAGVRRRTGRPGPAG 532
G + G G G+PG G
Sbjct: 944 PEGDEGPMGPPGAPGLEGQPGRKG 967
Score = 33.5 bits (75), Expect = 0.50
Identities = 66/255 (25%), Positives = 84/255 (32%), Gaps = 24/255 (9%)
Query: 291 RGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSK-ARGKERLTGRARRWDMKEDKEE 349
RGPR P LP G GQ P ++P A+G L G + K
Sbjct: 651 RGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRK-- 708
Query: 350 LEGQEGSQSTRETPSEEEQAQKQSGMEQ----GRLG-SAPAASPALASPEGPKGESVAST 404
G +G P E+ Q + GR G P P P+G +G
Sbjct: 709 --GHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPG---PKGSRGYIGLPG 763
Query: 405 ASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLR--PGAQESPVSWPEGSKQQPLG 462
+P S E L + G G+PG V G R PG +P G
Sbjct: 764 LFGLPGSDGERGLPGVPGKRGKMGMPG---FPGVFGERGPPGLDGNPGELGLPGPPGVPG 820
Query: 463 WSNHQAELEVQTCPEPQRGAGLP----EPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGT 518
L P P+ GL EPG G G Q P G + S+G
Sbjct: 821 LIGDLGVLGPIGYPGPKGMKGLMGSVGEPG--LKGDKGEQGVPGVSGDPGFQGDKGSQGL 878
Query: 519 AGVRRRTGRPGPAGR 533
G G+PGP G+
Sbjct: 879 PGFPGARGKPGPLGK 893
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 47.4 bits (111), Expect = 3e-05
Identities = 61/254 (24%), Positives = 92/254 (36%), Gaps = 51/254 (20%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQ---ASRPSVAPATGSKARGKERLTGRA 338
+GP G +GP P P GK +G ++P P K +G G
Sbjct: 90 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 149
Query: 339 RRWDMKEDKEE---LEGQEGSQSTRETPSEEEQAQKQSGME-QG-------------RLG 381
+ K + +G S+S+R P + + Q G + QG + G
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209
Query: 382 SAPAASPALASPEG--PKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVL 439
+ P P P+G P+G++ + +A S P PQ GP G
Sbjct: 210 NKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQ-----------------GPPPQG--- 249
Query: 440 GLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQ 499
G +P P P+G P G + Q P P + G P G +S S +
Sbjct: 250 GNQPQGPPPPPGKPQG--PPPQGGNKPQGP------PPPGKPQGPPPQGGSKSRSSRSPP 301
Query: 500 GLAPRSRPTRGGSQ 513
G P+ P +GG+Q
Sbjct: 302 G-KPQGPPPQGGNQ 314
Score = 40.8 bits (94), Expect = 0.003
Identities = 87/406 (21%), Positives = 135/406 (33%), Gaps = 87/406 (21%)
Query: 170 NKAEGKRIVSEKPTRARNQGIEG-----SPGGRVTRSPPTQVAISSDSARKGSWEPWSRP 224
++ E +++ P A QG SP G+ PP + +G P +P
Sbjct: 24 SQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPP-----QGGNQPQGPPPPPGKP 78
Query: 225 VGEPPEAGWDY------AQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQ 278
G PP+ G + + Q D +R R + P ++ + +
Sbjct: 79 QGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGK 138
Query: 279 LRGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQA-------------SRPSVAPATG 325
+G P +GP K Q PP D K R ++ ++P P
Sbjct: 139 PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 198
Query: 326 SKARGKERLTGRARRWDMKEDKEE---LEGQEGSQSTRETPSEEEQAQKQSGME-QG--- 378
K +G G + K + +G SQS R P + + Q G + QG
Sbjct: 199 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP 258
Query: 379 ----------RLGSAPAASPALASPEG--PKGESVASTASSVPCSPQEPDLAPLDLSLGG 426
+ G+ P P P+G P+G S + ++ S P PQ
Sbjct: 259 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQ------------- 305
Query: 427 AGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPE 486
GP G G +P P P+G P G + Q P P + G P
Sbjct: 306 ----GPPPQG---GNQPQGPPPPPGKPQG--PPPQGGNKPQGP------PPPGKPQGPPP 350
Query: 487 PGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G +S + + G P+ P + G+ G P PAG
Sbjct: 351 QGGSKSRSARSPPG-KPQGPPQQEGNNPQ----------GPPPPAG 385
Score = 38.1 bits (87), Expect = 0.020
Identities = 64/286 (22%), Positives = 98/286 (34%), Gaps = 38/286 (13%)
Query: 182 PTRARNQGIEGSPGGRVTRSPPTQVA---ISSDSARKGSWEPWSRPVGEPPEAGWDYAQW 238
P + + +G R +RSPP + + +G P +P G PP+ G
Sbjct: 156 PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG------ 209
Query: 239 KQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRGPRSHQK 298
+ + + QGD +K++S + +G P +GP
Sbjct: 210 -NKPQGPPPPGKPQGPPPQGD-------NKSQSARSPPGKPQGPPPQGGNQPQGP----- 256
Query: 299 LQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQS 358
PPP P G G ++P P G + ++R K + +G
Sbjct: 257 -PPPPGKPQGPPPQG-GNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQ 314
Query: 359 TRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEG--PKGESVASTASSVPCSPQEPD 416
+ P + Q QG G+ P P P+G P+G S + +A S P PQ P
Sbjct: 315 PQGPP--PPPGKPQGPPPQG--GNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGP- 369
Query: 417 LAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLG 462
P G P P G Q P P+G + P G
Sbjct: 370 --PQQEGNNPQGPPPPAG-----GNPQQPQAPPAGQPQGPPRPPQG 408
Score = 34.7 bits (78), Expect = 0.22
Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 27/180 (15%)
Query: 356 SQSTRETPSEEEQAQKQSGMEQG---RLGSAPAASPAL-ASPEGPKGESVASTASSVPCS 411
+Q+ E S+EE +G QG + G+ P P+ P+GP + + P
Sbjct: 16 AQNLNEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQG-GNQPQGPPPP 74
Query: 412 PQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQES-----PVSWPEGSK----QQPLG 462
P +P P GG GP G G P +S P P+G QP G
Sbjct: 75 PGKPQGPPPQ---GGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQG 131
Query: 463 ---------WSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQ 513
Q + Q P P + G P G+++S S + G P+ P +GG+Q
Sbjct: 132 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPG-KPQGPPPQGGNQ 190
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 47.0 bits (110), Expect = 4e-05
Identities = 92/365 (25%), Positives = 120/365 (32%), Gaps = 71/365 (19%)
Query: 189 GIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDLA 248
G+ G PG + PP + R+G RP G+P G A K E+ + A
Sbjct: 1510 GVAGRPGAKGPEGPP------GPTGRQGEKGEPGRP-GDPAVVGPAVAGPKGEKGDVGPA 1562
Query: 249 RLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGE-GPARAGSRRGPRSHQKLQPPPLLPD 307
QG+ R P L L G+ GP RGP PP
Sbjct: 1563 GPRGATGVQGE-RGPPGL-----------VLPGDPGPKGDPGDRGPIGLTGRAGPPGDSG 1610
Query: 308 GKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEE- 366
G G RP G RG++ G D L G+ G + R P
Sbjct: 1611 PPGEKGDPGRPGPPGPVGP--RGRDGEVGEKGDEGPPGDPG-LPGKAGERGLRGAPGVRG 1667
Query: 367 ---EQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLS 423
E+ + E GR GS P + P+G +GE P P +D
Sbjct: 1668 PVGEKGDQGDPGEDGRNGS-----PGSSGPKGDRGEP----------GPPGPPGRLVDTG 1712
Query: 424 LGGAGIPGPRESGCVLGLRPG--AQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRG 481
PG RE G PG QE P P+G P G + + P PQ
Sbjct: 1713 ------PGAREKG-----EPGDRGQEGPRG-PKGDPGLP-GAPGERGIEGFRGPPGPQGD 1759
Query: 482 AGLPEPGEDRS--------------GKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGR 527
G+ P ++ GK GA P + G G G+R G
Sbjct: 1760 PGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGL 1819
Query: 528 PGPAG 532
PGP+G
Sbjct: 1820 PGPSG 1824
Score = 44.7 bits (104), Expect = 2e-04
Identities = 72/280 (25%), Positives = 93/280 (33%), Gaps = 35/280 (12%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA-RGKERLTGRARR 340
+GP ++G + + P LP G G+ A G K RG G A
Sbjct: 1435 QGPVGPPGKKGEKGDSE-DGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGE 1493
Query: 341 WDMK-----EDKEELEGQEGSQSTR--ETPSEEEQAQKQSGMEQGRLGSAPAASPALASP 393
+ L G G + E P Q + G E GR G PA+A P
Sbjct: 1494 KGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKG-EPGRPGDPAVVGPAVAGP 1552
Query: 394 EGPKGESVASTASSVPCSPQEPDLAPLDLSLGG----AGIPGPRESGCVLGLRPGAQESP 449
+G KG+ A + + + P L L G G PG R +GL A
Sbjct: 1553 KGEKGD--VGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGP---IGLTGRAGPPG 1607
Query: 450 VSWPEGSKQQP--------LGWSNHQAELEVQTCPEPQRGAGLPEPGEDRS--------G 493
S P G K P +G E+ + P GLP +R G
Sbjct: 1608 DSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRG 1667
Query: 494 KSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
G + R GS S G G R G PGP GR
Sbjct: 1668 PVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGR 1707
Score = 42.7 bits (99), Expect = 8e-04
Identities = 66/266 (24%), Positives = 87/266 (32%), Gaps = 38/266 (14%)
Query: 281 GEGPARAGSRRGPRSHQKLQPPPLLPDGKG-RGGQASRPSVAPATGSKARGKERLTGRAR 339
G GP G + Q L P +G RG S P+V + L
Sbjct: 1908 GTGPKGDRGETGSKGEQGL------PGERGLRGEPGSVPNVDRLLETAGIKASALREIVE 1961
Query: 340 RWDMKEDK-----EELEGQEGSQSTRETPSEEEQA--QKQSGMEQGRLGSAPAASPALAS 392
WD E G +G + P +E + G++ R P P LA
Sbjct: 1962 TWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLAL 2021
Query: 393 PE-GPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLR-PGAQESPV 450
E GP G S + P P P A +G AG PG R G R ++ P
Sbjct: 2022 GERGPPGPSGLAGEPGKPGIPGLPGRAG---GVGEAGRPGERGERGEKGERGEQGRDGPP 2078
Query: 451 SWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRG 510
P G+ P P + EPG SG+ G + P
Sbjct: 2079 GLP-GTPGPP---------------GPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSN 2122
Query: 511 GSQ---RSRGTAGVRRRTGRPGPAGR 533
G Q RG G++ G PGP G+
Sbjct: 2123 GDQGPKGDRGVPGIKGDRGEPGPRGQ 2148
Score = 41.2 bits (95), Expect = 0.002
Identities = 75/288 (26%), Positives = 96/288 (33%), Gaps = 47/288 (16%)
Query: 290 RRGPRSHQKLQPPPL------LPDGKGRGGQASRPSVA--PATGSKARGKERLTGRARRW 341
RRGP+ Q PP P +G G P P RG +G A
Sbjct: 1977 RRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGE- 2035
Query: 342 DMKEDKEELEGQEGSQSTRETPSEE-EQAQKQSGMEQGRLGSAPAASPALASPEGPKGES 400
K L G+ G P E E+ +K EQGR G P P P GP G
Sbjct: 2036 PGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDG--PPGLPGTPGPPGPPGPK 2093
Query: 401 VASTASSVPCSPQE--PDLAPLDLSLGGAGIPGPRESGCVLGLR-----PGAQ------- 446
V+ S ++ P L G G GP+ V G++ PG +
Sbjct: 2094 VSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPG 2153
Query: 447 ---ESPVSWPEGSK-----QQPLGWSNHQAELEVQTCPE------PQRGAGLP------- 485
E ++ PEG + P G + P PQ +GL
Sbjct: 2154 LPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETG 2213
Query: 486 EPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
PG +G +GA P G Q S G G TG+PG GR
Sbjct: 2214 PPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGR 2261
Score = 40.4 bits (93), Expect = 0.004
Identities = 71/273 (26%), Positives = 86/273 (31%), Gaps = 41/273 (15%)
Query: 283 GPARAGSRRGPRSHQ-----KLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGR 337
GP A GP Q K +P P G+G G + G L G
Sbjct: 2186 GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSG-----LVG- 2239
Query: 338 ARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPK 397
+ L GQ G P + SG + R SP L P GPK
Sbjct: 2240 ------PQGSPGLPGQVGETGKPGAPGRDGA----SGKDGDRGSPGVPGSPGLPGPVGPK 2289
Query: 398 GESVASTASS-----VPCSPQEP--------DLAPLDLSLGGAGIPGPRESGCVLGLRPG 444
GE + A +P + E DL + G G+PGPR G R G
Sbjct: 2290 GEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAG-RAG 2348
Query: 445 AQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAG----LPEPG-EDRSGKSGAQQ 499
P + P G+ + V P P G L PG G G
Sbjct: 2349 EPGDPGEDGQKGAPGPKGFKGDPG-VGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPG 2407
Query: 500 GLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
PR + G RG AG R G PGP G
Sbjct: 2408 QTGPRGEMGQPGPSGERGLAGPPGREGIPGPLG 2440
Score = 38.1 bits (87), Expect = 0.020
Identities = 98/441 (22%), Positives = 139/441 (31%), Gaps = 99/441 (22%)
Query: 182 PTRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQE 241
P +A +G+ G+PG R + R GS S P G+ E G +
Sbjct: 1651 PGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGS-PGSSGPKGDRGEPGPPGPPGRL- 1708
Query: 242 REQIDLARLARHRDAQGDWRRPWDLD-KAKSTLQDCSQLRG-------EGPARAGSRRGP 293
+D AR + GD + K L RG GP RGP
Sbjct: 1709 ---VDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGP 1765
Query: 294 RSHQKLQPPPLLPDGKGRGGQ--ASRPSVAPATGSKA-----------RGKERLTGRARR 340
+ + PP L G G+ A+ PS KA RG++ L G +
Sbjct: 1766 AGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGP 1825
Query: 341 WDM--KEDKEELEGQEGSQSTRETPSEE----EQAQKQSGMEQGRLGS----------AP 384
+ K ++ G G P E+ E+ + +GR G P
Sbjct: 1826 PGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGP 1885
Query: 385 AASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPR----ESGCV-- 438
P L P GP G+ + S G G+PG R E G V
Sbjct: 1886 QGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETG----SKGEQGLPGERGLRGEPGSVPN 1941
Query: 439 -------LGLRPGA-QESPVSWPEGS------------------------KQQPLGWSNH 466
G++ A +E +W E S K+ P+G+
Sbjct: 1942 VDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGE 2001
Query: 467 QAELEVQTCPEPQRGAGLP--------------EPGEDR-SGKSGAQQGLAPRSRPTRGG 511
+ + P PQ GL EPG+ G G G+ RP G
Sbjct: 2002 RGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERG 2061
Query: 512 SQRSRGTAGVRRRTGRPGPAG 532
+ +G G + R G PG G
Sbjct: 2062 ERGEKGERGEQGRDGPPGLPG 2082
Score = 37.0 bits (84), Expect = 0.045
Identities = 64/272 (23%), Positives = 91/272 (33%), Gaps = 25/272 (9%)
Query: 280 RGE----GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLT 335
RGE GP+ GP + + P PL P G G P + G K L
Sbjct: 2412 RGEMGQPGPSGERGLAGPPGREGI-PGPLGPPGPP--GSVGPPGASGLKGDKGDPGVGLP 2468
Query: 336 G-RARRWDMKEDKEE-LEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASP 393
G R R + E+ GQEG + P + ++ + L S + P
Sbjct: 2469 GPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGP 2528
Query: 394 EGPKGESV-----ASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLR------ 442
GP+G P+ + P D G G PG + S + GLR
Sbjct: 2529 PGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDK--GSKGEPGDKGSAGLPGLRGLLGPQ 2586
Query: 443 --PGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQG 500
PGA P K G + ++ P +G + G+ G +
Sbjct: 2587 GQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMG-PRGLKGERGVKGACGLDGEKGDKGE 2645
Query: 501 LAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P RP G + G GV ++G PG G
Sbjct: 2646 AGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEG 2677
Score = 36.2 bits (82), Expect = 0.077
Identities = 73/309 (23%), Positives = 98/309 (31%), Gaps = 63/309 (20%)
Query: 280 RGEGPARA-GSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRA 338
RGE R R G + L PP +G G + G A R
Sbjct: 2474 RGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRG 2533
Query: 339 RRWDMKE-DKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPK 397
+ DM E L+G +G + P + K S E G GSA P L GP+
Sbjct: 2534 AKGDMGERGPRGLDGDKGPRGDNGDPGD-----KGSKGEPGDKGSA--GLPGLRGLLGPQ 2586
Query: 398 GESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSK 457
G+ A+ P SP + + + G G GPR G++ +G
Sbjct: 2587 GQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEA 2646
Query: 458 QQP--LGWSNHQAEL--------------------------EVQTCPEPQRG-------- 481
P G + H+ E+ + Q P+ +G
Sbjct: 2647 GPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTP 2706
Query: 482 --AGLPEP-GEDRS-GKSGAQQGLAPRSRPTRGGSQRSRG--------------TAGVRR 523
G P P G D S G G + PR G + RG G R
Sbjct: 2707 GIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERG 2766
Query: 524 RTGRPGPAG 532
GRPGPAG
Sbjct: 2767 EQGRPGPAG 2775
Score = 35.4 bits (80), Expect = 0.13
Identities = 69/263 (26%), Positives = 83/263 (31%), Gaps = 59/263 (22%)
Query: 301 PP--PLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQS 358
PP P LP G G P A A G RG GR G+ G+
Sbjct: 1270 PPGDPGLPGRTGAPGPQGPPGSATAKGE--RGFPGADGRPGS----------PGRAGNPG 1317
Query: 359 TRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGES------VASTASSVPCSP 412
T P G++ P P P GPKGE + +P
Sbjct: 1318 TPGAP----------GLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRK 1367
Query: 413 QEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELE- 471
+P + G G PGPR GL PG G + P A E
Sbjct: 1368 GDPGPSGPPGPRGPLGDPGPRGPP---GL-PGTAMKGDKGDRGERGPPGPGEGGIAPGEP 1423
Query: 472 ----VQTCPEPQRGAGLP----EPGEDRSGKSG--------AQQGLAPRSRPTRGGSQRS 515
+ P PQ G P E G+ G G +QG PR P G +
Sbjct: 1424 GLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQG--PRGPPGAIGPKGD 1481
Query: 516 R------GTAGVRRRTGRPGPAG 532
R G AG + G PGPAG
Sbjct: 1482 RGFPGPLGEAGEKGERGPPGPAG 1504
Score = 31.2 bits (69), Expect = 2.5
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 442 RPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGL 501
+P + PV P+G K +P E+ ++ P GLP G++GA
Sbjct: 1241 QPRPEPCPVYCPKGQKGEP-------GEMGLRGQVGPPGDPGLP-------GRTGAP--- 1283
Query: 502 APRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
P+ P GS ++G G GRPG GR
Sbjct: 1284 GPQGPP---GSATAKGERGFPGADGRPGSPGR 1312
Score = 30.0 bits (66), Expect = 5.5
Identities = 38/142 (26%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 393 PEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLR--PGAQESPV 450
P+G KGE P +P L G G GP S G R PGA P
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPGDPGLPG---RTGAPGPQGPPGSATAKGERGFPGADGRPG 1308
Query: 451 SWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRG 510
S G P + GLP P G G + P+ P
Sbjct: 1309 SPGRAGNPGTPG------------APGLKGSPGLPGP----RGDPGERGPRGPKGEPGAP 1352
Query: 511 GSQRSRGTAGVRRRTGRPGPAG 532
G G+ R G PGP+G
Sbjct: 1353 GQVIGGEGPGLPGRKGDPGPSG 1374
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 47.0 bits (110), Expect = 4e-05
Identities = 70/266 (26%), Positives = 95/266 (35%), Gaps = 24/266 (9%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA-RGKERLTGRARR 340
+G A +GPR Q PP GR G + TG K RG + L G
Sbjct: 502 KGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGE 561
Query: 341 WDMKEDKEEL-----EGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEG 395
+ D + G++G + P QA + +G LG P SP G
Sbjct: 562 KGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPG--PRGLLG--PRGSPGPTGRPG 617
Query: 396 PKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESP----VS 451
G A A P EP + G G+PGP+ ++G PG + P +
Sbjct: 618 VTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQG---LIG-TPGEKGPPGNPGIP 673
Query: 452 WPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLP-EPG----EDRSGKSGAQQGLAPRSR 506
GS PLG H+ + P AG P PG + SG G Q +
Sbjct: 674 GLPGS-DGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGE 732
Query: 507 PTRGGSQRSRGTAGVRRRTGRPGPAG 532
G + G G + + G PGP G
Sbjct: 733 DGFPGFKGDVGLKGDQGKPGAPGPRG 758
Score = 42.7 bits (99), Expect = 8e-04
Identities = 64/256 (25%), Positives = 88/256 (34%), Gaps = 40/256 (15%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRW 341
+G A +G + + PP P +G G P A G RG L G+ +
Sbjct: 1078 KGDVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGR--RGPPGLFGQ-KGD 1134
Query: 342 DMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGS-APAASPALASPEGPKGES 400
D + G G Q P E+ E G +GS P +P P GP+G +
Sbjct: 1135 DGVRGFVGVIGPPGLQGLPGPPGEKG--------EVGDVGSMGPHGAPG---PRGPQGPT 1183
Query: 401 VASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQP 460
+ +P +P G AG PGP + + G + E S P G+
Sbjct: 1184 GSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGA---- 1239
Query: 461 LGWSNHQAELEVQTCPEPQRGAGLPEPGEDRS----GKSGAQQGLAPRSRPTRGGSQRSR 516
P ++G PGED + G +G L P P G S
Sbjct: 1240 -------------AGPPGKKG----PPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSP 1282
Query: 517 GTAGVRRRTGRPGPAG 532
G G G PGP G
Sbjct: 1283 GEKGDPGDVGGPGPPG 1298
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/196 (27%), Positives = 70/196 (35%), Gaps = 22/196 (11%)
Query: 351 EGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSA----PAASPALASPEGP---KGESVAS 403
+G GS+ T P Q E+G G A P +P + P+G KG+S S
Sbjct: 1180 QGPTGSEGTPGLPGGVGQPGAVG--EKGERGDAGDPGPPGAPGIPGPKGDIGEKGDSGPS 1237
Query: 404 TASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQP--L 461
A+ P P S+G G+PG LG S + G K P +
Sbjct: 1238 GAAGPPGKKGPPGEDGAKGSVGPTGLPGD------LGPPGDPGVSGIDGSPGEKGDPGDV 1291
Query: 462 GWSNHQAELEVQTCPEP--QRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSR--- 516
G P P +RG E R G+ GA+ P P R G +R
Sbjct: 1292 GGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPP 1351
Query: 517 GTAGVRRRTGRPGPAG 532
G G G PGP G
Sbjct: 1352 GRVGPEGLRGIPGPVG 1367
Score = 39.3 bits (90), Expect = 0.009
Identities = 66/241 (27%), Positives = 85/241 (35%), Gaps = 46/241 (19%)
Query: 306 PDG-KGRGGQASRPSVAPATGSKAR-GKERLTGRARRWDMKEDKEELEGQEGSQSTRETP 363
P+G KG+ GQA + G K + G L G R K G G
Sbjct: 762 PEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPK-------GSIGFPGPLGPI 814
Query: 364 SEEEQAQK--QSGME--QGRLGS-APAASPALASPEGPKGESVASTASSVPCSPQEPDLA 418
E+ ++ K Q G+E +G GS P GPKG+ A +P P L
Sbjct: 815 GEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQ 874
Query: 419 PLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEP 478
G G PGP+ PG Q G +P G + EL Q P
Sbjct: 875 ------GPPGFPGPKGP-------PGHQ--------GKDGRP-GHPGQRGELGFQGQTGP 912
Query: 479 QRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRT------GRPGPAG 532
AG+ P GK+G L R P G +G G+ R G PGP G
Sbjct: 913 PGPAGVLGP----QGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLG 968
Query: 533 R 533
+
Sbjct: 969 K 969
Score = 38.5 bits (88), Expect = 0.016
Identities = 69/278 (24%), Positives = 96/278 (34%), Gaps = 66/278 (23%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRW 341
+GP GP + Q PP G A P G K R
Sbjct: 679 DGPLGHPGHEGPTGEKGAQGPP---------GSAGPPGYPGPRGVKGTSGNR-------- 721
Query: 342 DMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESV 401
L+G++G + P + + +QG+ G+ PEGPKG++
Sbjct: 722 -------GLQGEKGEKGEDGFPGFKGDVGLKG--DQGKPGAPGPRGED--GPEGPKGQAG 770
Query: 402 ASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPL 461
+ P S E + G G PGP+ S +G PG P+ P G K +
Sbjct: 771 QAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGS---IGF-PG----PLG-PIGEKGK-- 819
Query: 462 GWSNHQAELEVQTCPEPQRG-------AGLPEP----GEDRSGKSGAQQGL--------- 501
Q LE + P RG G P P G+D + ++GL
Sbjct: 820 SGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGF 879
Query: 502 -APRSRPT------RGGSQRSRGTAGVRRRTGRPGPAG 532
P+ P R G RG G + +TG PGPAG
Sbjct: 880 PGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAG 917
Score = 38.5 bits (88), Expect = 0.016
Identities = 69/265 (26%), Positives = 91/265 (34%), Gaps = 43/265 (16%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGR---GGQASRPSVAPATGSKARGKE--RLTG 336
+GP +GP HQ P P +G GQ P A G + + E L
Sbjct: 874 QGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGE 933
Query: 337 RARRWDMKEDKEE----LEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALAS 392
R E+ LEG+EG++ P + G R P P
Sbjct: 934 RGPPGPPGPPGEQGLPGLEGREGAKGELGPPGP----LGKEGPAGLRGFPGPKGGPGDPG 989
Query: 393 PEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSW 452
P G KG+ SP E PL + GG G+PG +SG E PV
Sbjct: 990 PTGLKGDKGPPGPVGANGSPGER--GPLGPA-GGIGLPG--QSG---------SEGPVG- 1034
Query: 453 PEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEP-----GEDRSGKSGAQQGLAPRSRP 507
P G + E + P P G+P P +G SG + P
Sbjct: 1035 -------PAGKKGSRGE---RGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAP 1084
Query: 508 TRGGSQRSRGTAGVRRRTGRPGPAG 532
GS+ +G AG + G GPAG
Sbjct: 1085 GHKGSKGDKGDAGPPGQPGIRGPAG 1109
Score = 37.7 bits (86), Expect = 0.026
Identities = 66/268 (24%), Positives = 96/268 (35%), Gaps = 57/268 (21%)
Query: 301 PPPLLPDG-KGRGGQASRPSV----APATGSKARGKERLTGR-ARRWDMKEDKEE----- 349
P PL P G KG+ G+ +P + P RG+ TG+ + D+ +D
Sbjct: 808 PGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGE 867
Query: 350 -----LEGQEGSQSTRETPSEE-EQAQKQSGMEQGRLG----SAPAASPALASPEGPKGE 399
L+G G + P + + + ++G LG + P + P+G GE
Sbjct: 868 KGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGE 927
Query: 400 SVASTASSVPCSPQEPD------LAPLDLSLGGAGIPGPRESGCVLGLR--PGAQESPVS 451
P P P L + + G G PGP GLR PG + P
Sbjct: 928 VGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGD 987
Query: 452 -WPEGSKQQ-----PLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRS 505
P G K P+G + E + P G GLP G+SG++ + P
Sbjct: 988 PGPTGLKGDKGPPGPVGANGSPGE---RGPLGPAGGIGLP-------GQSGSEGPVGPA- 1036
Query: 506 RPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
G G R G PGP G+
Sbjct: 1037 -----------GKKGSRGERGPPGPTGK 1053
Score = 37.4 bits (85), Expect = 0.035
Identities = 54/217 (24%), Positives = 69/217 (31%), Gaps = 33/217 (15%)
Query: 345 EDKEELEGQEGSQSTR-------ETPSEEEQAQKQSGMEQGRLGSAPAAS--------PA 389
E K E +EG ST E PS + E+G G P
Sbjct: 336 ETKAAREDEEGDDSTMGPDFRAAEYPSRTQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPG 395
Query: 390 LASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGA---Q 446
P+G G S P P P A L G GI GP + ++ + +
Sbjct: 396 APGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFK 455
Query: 447 ESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEP-----------GEDRSGKS 495
PVS+ + Q L Q +L ++ P P G P P E G
Sbjct: 456 GPPVSFQQAQAQAVL----QQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQ 511
Query: 496 GAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G + P P R G G G R G GP G
Sbjct: 512 GPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKG 548
Score = 37.0 bits (84), Expect = 0.045
Identities = 70/275 (25%), Positives = 91/275 (33%), Gaps = 45/275 (16%)
Query: 282 EGPARAGSRRGPRSHQKLQPP--PLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRAR 339
EGP + +G KL P P P G G P G K GK TG+
Sbjct: 775 EGPPGSAGEKG-----KLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEK--GKSGKTGQP- 826
Query: 340 RWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAAS--------PALA 391
E G GS+ R P Q + + Q P P
Sbjct: 827 ------GLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFP 880
Query: 392 SPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPR-ESGCV--LGLR------ 442
P+GP G P E G AG+ GP+ ++G V LG R
Sbjct: 881 GPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPP 940
Query: 443 --PGAQESP-VSWPEGSKQQ--PLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGA 497
PG Q P + EG+K + P G + ++ P P+ G G P P +G
Sbjct: 941 GPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGP-------TGL 993
Query: 498 QQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
+ P GS RG G G PG +G
Sbjct: 994 KGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSG 1028
Score = 34.3 bits (77), Expect = 0.29
Identities = 63/263 (23%), Positives = 92/263 (34%), Gaps = 45/263 (17%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRW 341
EGP A +G PP P G G A P + G + +
Sbjct: 391 EGPPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIM------ 444
Query: 342 DMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESV 401
+ Q S + P +QAQ Q+ ++Q +L ++ P GP G +
Sbjct: 445 --------MPFQFAGGSFKGPPVSFQQAQAQAVLQQTQL--------SMKGPPGPVGLTG 488
Query: 402 ASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL--RPGAQESPVSWPEGSKQQ 459
+P P + G G+ GP +G RPGA +G++
Sbjct: 489 RPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGA--------DGARGL 540
Query: 460 PLGWSNHQAELEVQTCP-----EPQRG----AGLP-EPGEDRSGKSGAQQGLAPRSRPTR 509
P G + + + P + QRG G P PGED G+ GA+ P +
Sbjct: 541 P-GDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGED--GERGAEGPPGPTGQAGE 597
Query: 510 GGSQRSRGTAGVRRRTGRPGPAG 532
G + G G TGRPG G
Sbjct: 598 PGPRGLLGPRGSPGPTGRPGVTG 620
Score = 33.5 bits (75), Expect = 0.50
Identities = 61/238 (25%), Positives = 77/238 (32%), Gaps = 43/238 (18%)
Query: 306 PDGKGRGGQASRPSVAPATGSKAR----GKERLTGRARRWDMKEDKEELEGQEGSQSTRE 361
P KG G P A+G GK +G R EG+EG + +
Sbjct: 1282 PGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGR----------EGREGEKGAKG 1331
Query: 362 TPSEEEQAQKQSGMEQGRLGSAPAASP-ALASPEGPKGESVASTASSVPCSPQEPDL--A 418
P + GR G A P PEG +G +P EP L A
Sbjct: 1332 EPGPDGPP--------GRTGPMGARGPPGRVGPEGLRG---------IPGPVGEPGLLGA 1374
Query: 419 PLDLS----LGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQT 474
P + LG +G+PG + G + + P G G Q VQ
Sbjct: 1375 PGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEA----GEKGDQGLPGVQG 1430
Query: 475 CPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P P+ G P P G G P + GS S G G G PGP G
Sbjct: 1431 PPGPKGDPGPPGP-IGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPG 1487
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 47.0 bits (110), Expect = 4e-05
Identities = 65/244 (26%), Positives = 91/244 (37%), Gaps = 47/244 (19%)
Query: 181 KPTRARNQ--GIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVG------EPPEAG 232
+P RAR + G+ SP + PP A K SW PP G
Sbjct: 637 RPARARGEIGGLSLSPSPERRKPPPPDPATKP----KVSWIHGKHSAAAAGRAPSPPPPG 692
Query: 233 WDYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRG 292
+ A +R++ + A H G R + ++ + L P RA +R
Sbjct: 693 SEAAPSPSKRKRTPSDKSA-HTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAA 751
Query: 293 PRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEG 352
PR PL G+ R A R A + RGK R GRA E
Sbjct: 752 PR--------PLGAHGRRRS-PAKRAEAASMLAADVRGKTRSLGRA------------EV 790
Query: 353 QEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASP--EGPKGESVASTASSVPC 410
G+Q RE P+ ++A++ S P ASPA A P E P G A+T P
Sbjct: 791 ALGAQGPREKPAPPQKAKR----------SVPPASPARAPPATETP-GPEKAATDLPAPE 839
Query: 411 SPQE 414
+P++
Sbjct: 840 TPRK 843
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 47.0 bits (110), Expect = 4e-05
Identities = 65/244 (26%), Positives = 91/244 (37%), Gaps = 47/244 (19%)
Query: 181 KPTRARNQ--GIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVG------EPPEAG 232
+P RAR + G+ SP + PP A K SW PP G
Sbjct: 632 RPARARGEIGGLSLSPSPERRKPPPPDPATKP----KVSWIHGKHSAAAAGRAPSPPPPG 687
Query: 233 WDYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRG 292
+ A +R++ + A H G R + ++ + L P RA +R
Sbjct: 688 SEAAPSPSKRKRTPSDKSA-HTVEHGSPRTRDPTPRPPGLPEEATALAAPSPPRARARAA 746
Query: 293 PRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEG 352
PR PL G+ R A R A + RGK R GRA E
Sbjct: 747 PR--------PLGAHGRRRS-PAKRAEAASMLAADVRGKTRSLGRA------------EV 785
Query: 353 QEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASP--EGPKGESVASTASSVPC 410
G+Q RE P+ ++A++ S P ASPA A P E P G A+T P
Sbjct: 786 ALGAQGPREKPAPPQKAKR----------SVPPASPARAPPATETP-GPEKAATDLPAPE 834
Query: 411 SPQE 414
+P++
Sbjct: 835 TPRK 838
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 46.6 bits (109), Expect = 6e-05
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 16/163 (9%)
Query: 381 GSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLG 440
G P L GPKGE P P + + +G G GPR LG
Sbjct: 69 GGRSPGPPGLPGKTGPKGEKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEGPRGEKGDLG 128
Query: 441 LR--PGAQESPVSWPEGSKQQP--LGWSNHQAELEVQTCPEPQRG-AGLP----EPGE-D 490
+ PG++ P GSK P G + E + P+ ++G G P + GE
Sbjct: 129 MMGLPGSRG-----PMGSKGYPGSRGEKGSRGE-KGDLGPKGEKGFPGFPGMLGQKGEMG 182
Query: 491 RSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
G+ G P RP + G Q +G +GV G+PGP+G+
Sbjct: 183 PKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQ 225
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 45.8 bits (107), Expect = 1e-04
Identities = 52/169 (30%), Positives = 64/169 (37%), Gaps = 25/169 (14%)
Query: 376 EQGRLGSAPAASPA----------LASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLG 425
E G +G+A A PA L+ P GP G A+ + + P +A G
Sbjct: 266 EIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPG 325
Query: 426 GAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLP 485
GIPGP + G R G P P GSK G S ++ E P G P
Sbjct: 326 PRGIPGPVGAAGATGAR-GLVGEP--GPAGSK----GESGNKGE------PGSAGPQGPP 372
Query: 486 EPG--EDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P E + G +G P P GS SRG G R G GP G
Sbjct: 373 GPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPG 421
Score = 43.1 bits (100), Expect = 6e-04
Identities = 74/282 (26%), Positives = 99/282 (35%), Gaps = 43/282 (15%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSK-ARGKERLTGRARRW 341
GPA A RGP PP G G+ RP G + ARG G
Sbjct: 127 GPAGA---RGPAG------PPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFK 177
Query: 342 DMKEDK--EELEGQEGSQSTRETPSE--EEQAQKQSGM-----EQGRLGS-APAASPALA 391
++ + L+GQ G+ + P E Q+G E+GR+G+ PA +
Sbjct: 178 GIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSD 237
Query: 392 SPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVS 451
GP G + ++ P P P ++G AG GP +GL PG PV
Sbjct: 238 GSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGL-PGLS-GPVG 295
Query: 452 WPEGSKQQPLGWSNHQAELE----------VQTCPEPQRGAG-------LPEPG----ED 490
P L + A L + P P AG + EPG +
Sbjct: 296 PPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKG 355
Query: 491 RSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
SG G P+ P G + RG G G PGP G
Sbjct: 356 ESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPG 397
Score = 38.5 bits (88), Expect = 0.016
Identities = 64/257 (24%), Positives = 86/257 (33%), Gaps = 44/257 (17%)
Query: 283 GPARAGSRRGPRSHQKLQPP--PLLPDGK----GRGGQASRPSVAPATGSKA-RGKERLT 335
GPA RGP P P+ G G G P V A G+ G L
Sbjct: 583 GPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLP 642
Query: 336 GRARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEG 395
G + K E +G+ G + P + +G G+ A PA A+ G
Sbjct: 643 GERGAAGIPGGKGE-KGEPGLRGEIGNPGRDGA--------RGAPGAVGAPGPAGAT--G 691
Query: 396 PKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEG 455
+GE+ A+ G AG GPR S G A + + P G
Sbjct: 692 DRGEAGAA---------------------GPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
Query: 456 SKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRS 515
+ QP A+ P+ + G P +G +G P GG
Sbjct: 731 AAGQPGAKGERGAK-----GPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM 785
Query: 516 RGTAGVRRRTGRPGPAG 532
G G RTG PGP+G
Sbjct: 786 TGFPGAAGRTGPPGPSG 802
Score = 37.7 bits (86), Expect = 0.026
Identities = 69/278 (24%), Positives = 89/278 (32%), Gaps = 62/278 (22%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATG----SKARGKERLTGRA 338
GP A G R L P KG G P A G S GK G A
Sbjct: 331 GPVGAAGATGARG---LVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEA 387
Query: 339 RRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKG 398
G GS +R P + +A G GS A+ PA GP G
Sbjct: 388 G----SAGPPGPPGLRGSPGSRGLPGADGRAGVM-----GPPGSRGASGPA--GVRGPNG 436
Query: 399 ESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPE-GSK 457
++ P EP L +G G+PG + + P +E PV P +
Sbjct: 437 DAGR---------PGEPGL------MGPRGLPGSPGN-----IGPAGKEGPVGLPGIDGR 476
Query: 458 QQPLGWSNHQAELEVQTCPEPQRGAGLP----------------EPGEDRS-------GK 494
P+G + + E P P+ G P PG D + G
Sbjct: 477 PGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGP 536
Query: 495 SGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G Q G + P G Q G +G G+PG G
Sbjct: 537 QGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERG 574
Score = 37.4 bits (85), Expect = 0.035
Identities = 71/264 (26%), Positives = 88/264 (33%), Gaps = 37/264 (14%)
Query: 279 LRGE--GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA-RGKERLT 335
LRGE P R G+R P + P D +G G A A GS RG+
Sbjct: 662 LRGEIGNPGRDGARGAPGAVGAPGPAGATGD-RGEAGAAGPAGPAGPRGSPGERGEVGPA 720
Query: 336 GRARRWDMKEDKEELEGQEGSQSTRETPSEE-EQAQKQSGMEQGRLG-SAPAASPALASP 393
G G G P + E+ K E G +G + P + A P
Sbjct: 721 GP-------------NGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGP 767
Query: 394 EGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGI---PGPRESGCVLGLR-PGAQESP 449
GP G + + P P A G +GI PGP GLR P + P
Sbjct: 768 NGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGP 827
Query: 450 VSWP-EGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPT 508
V E P G++ + P AG P G G Q L
Sbjct: 828 VGRTGEVGAVGPPGFAGEKG---------PSGEAGTAGP----PGTPGPQGLLGAPGILG 874
Query: 509 RGGSQRSRGTAGVRRRTGRPGPAG 532
GS+ RG GV G PGP G
Sbjct: 875 LPGSRGERGLPGVAGAVGEPGPLG 898
Score = 35.8 bits (81), Expect = 0.10
Identities = 56/232 (24%), Positives = 72/232 (31%), Gaps = 49/232 (21%)
Query: 306 PDGKGRGGQASRPSVAPATGSKAR----GKERLTGRARRWDMKEDKEELEGQEGSQSTRE 361
P +G G P V A G R G + GR +GQ G + R
Sbjct: 903 PGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGR-------------DGQPGHKGERG 949
Query: 362 TPSEEEQAQKQSGMEQGRLGSAPAA-SPALASPEGPKGESVASTASSVPCSPQEPDLAPL 420
P G +G AA +P P GP G+ + + P P
Sbjct: 950 YP--------------GNIGPVGAAGAPGPHGPVGPAGKH-GNRGETGPSGP-------- 986
Query: 421 DLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQR 480
+G AG GPR G+R E P G G H +
Sbjct: 987 ---VGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLP----GLKGHNGLQGLPGIAGHHG 1039
Query: 481 GAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G P +G G P + R G + G AG+R G GPAG
Sbjct: 1040 DQGAPG-SVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAG 1090
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 45.8 bits (107), Expect = 1e-04
Identities = 90/374 (24%), Positives = 127/374 (33%), Gaps = 60/374 (16%)
Query: 192 GSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWDYAQWKQEREQIDLARLA 251
G PG + P T +SA EP S P G PP G D KQ+ E A
Sbjct: 326 GVPGEDPSSRPATPELAEPESAPTLRVEPPSPPEG-PPNPGPDGG--KQDGEAPPAGPCA 382
Query: 252 RHRD-------AQGDWRRPWD--LDKAKSTLQDCSQLR-GEGP-ARAGSRRGPRSHQKLQ 300
D A D P+ + + +T + E P AR G R +
Sbjct: 383 PATDKAEEVVCAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPT 442
Query: 301 PPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTR 360
PP L + KG G A P T ER G + E G E S +
Sbjct: 443 PPVLPDEEKGPPGPAPEPEREAETEP-----ERGAGT---------EPERIGTEPSTAPA 488
Query: 361 ETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPL 420
+P + K PAASP LA+ E P E + + +P+ P
Sbjct: 489 PSPPAPKSCLKH---RPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERA 545
Query: 421 D--------------LSLGGAGIPGPRE---SGCVLGLRPGAQESPVSWPEG----SKQQ 459
+ GGA + G ++ S C RPG P+ G ++
Sbjct: 546 EAPPAGAERAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSR-PLERASGRLPLARSG 604
Query: 460 PLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTA 519
P+ W + A ++Q PEPQ P +R + + +P G ++S A
Sbjct: 605 PV-WRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASP------AGPRKSPQEA 657
Query: 520 GVRRRTGRPGPAGR 533
T P PA +
Sbjct: 658 AAAPGTREPCPAAQ 671
Score = 30.0 bits (66), Expect = 5.5
Identities = 75/327 (22%), Positives = 116/327 (35%), Gaps = 60/327 (18%)
Query: 175 KRIVSEKPTRARNQGIEGSPGGRVTRSPPTQVAISSDSARKGSWEPWSRPVGEPPEAGWD 234
K + +P A ++G SP SPP + S A + E E P AG +
Sbjct: 495 KSCLKHRPAAA-SEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEAPPAGAE 553
Query: 235 YA--QWKQEREQIDL-------ARLARHRDAQGDWR------------RPWDLDKAKSTL 273
A + K ER +L R R G R R + ++++ L
Sbjct: 554 RAAPERKAERGGAELRGAKKFSVSSCRARPRPGVSRPLERASGRLPLARSGPVWRSEAAL 613
Query: 274 QDCSQLRGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKER 333
D L P ++ GPR + P D R + P +P + A G
Sbjct: 614 DDLQGL----PEPQHAKPGPRKLAERGP----QDSGDRAASPAGPRKSPQEAAAAPGTRE 665
Query: 334 LTGRARRWDMKEDKE----ELEGQEGSQSTRETPSEEEQAQKQSGM-------------- 375
A+ ED+ +L S R+ S+E + K+
Sbjct: 666 PCPAAQEPAPSEDRNPFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKE 725
Query: 376 EQGRLGSAPAASPALASPEGPKGES-VASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRE 434
E+ LG+APA A + KG++ SS P P++P L L P P +
Sbjct: 726 EKCPLGTAPALRGTRAPSDQGKGKARPPEPLSSKPPLPRKPLLQSFTL----PHQPAPPD 781
Query: 435 SGCVLGLRPGAQESPVSWPEGSKQQPL 461
+G PG +E P P ++++PL
Sbjct: 782 AG------PGERE-PRKEPRTAEKRPL 801
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.4 bits (106), Expect = 1e-04
Identities = 64/240 (26%), Positives = 84/240 (35%), Gaps = 24/240 (10%)
Query: 301 PPPLLPDG-KGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEE----LEGQEG 355
P P+ P G KG G+ P PA + G R+ K + L G++G
Sbjct: 616 PGPVGPAGIKGAKGEPCEP--CPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQG 673
Query: 356 SQSTRETPSEEEQAQKQSGMEQGRLGSAPAAS--PALASPEGPKGESVASTASSVPCSPQ 413
R ++ A P S P + P GPKGE +
Sbjct: 674 KAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGT 733
Query: 414 EPDLAPLDLSLGGAGIPGPRESGCVLGL-RPGAQESPVSWPEGSKQQPLGWSNHQAELEV 472
D+A G G PGP+ G+ RPG P P Q P G Q E
Sbjct: 734 VTDMA------GRPGQPGPKGEQGPEGVGRPGKPGQP-GLP--GVQGPPGLKGVQGEPG- 783
Query: 473 QTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
P RG P+ G G Q PR P G + ++G+ GV+ TG GP G
Sbjct: 784 ----PPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPG 839
Score = 43.5 bits (101), Expect = 5e-04
Identities = 76/312 (24%), Positives = 114/312 (36%), Gaps = 56/312 (17%)
Query: 224 PVGEPPEAGWDYAQWKQEREQIDLARLARHRDAQGD-WRRPWDLDKAKSTLQDCSQLRGE 282
P G PPE K R+ + + ++G + R + L++ +++ D +QL G
Sbjct: 244 PAGCPPETS------KARRDTQSNELIEINPQSEGKVYTRCFCLEEPQNSEVD-AQLTGR 296
Query: 283 GPARAGSRRGPRSHQKL---QPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRAR 339
+A RG + HQ+ + PP + G + S ++AP+ +G+ L G
Sbjct: 297 ISQKA--ERGAKVHQETAADECPPCV-----HGARDSNVTLAPSGPKGGKGERGLPGPP- 348
Query: 340 RWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGS-APAASPALASPEGPKG 398
K +K G G+ R +P Q + E+G G+ P+ P +G KG
Sbjct: 349 --GSKGEK----GARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKG 402
Query: 399 ESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQ 458
E VP P G G PG CV+G P+G K
Sbjct: 403 EKGDGGIKGVPGKP------------GRDGRPGEI---CVIG------------PKGQKG 435
Query: 459 QP--LGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSR 516
P +G E P P G GLP D G G + P + G
Sbjct: 436 DPGFVGPEGLAGEPGPPGLPGPP-GIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKP 494
Query: 517 GTAGVRRRTGRP 528
G GV+ G P
Sbjct: 495 GKPGVKGEKGDP 506
Score = 40.4 bits (93), Expect = 0.004
Identities = 53/195 (27%), Positives = 72/195 (36%), Gaps = 44/195 (22%)
Query: 376 EQGRLGSA-PAASPALASPEGPKGESVASTASSVPCSP-------QEPDLAPLDL----- 422
E+G G A PA SP P GP G + A PC P Q+ D+ + L
Sbjct: 600 EKGNFGEAGPAGSPG---PPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSG 656
Query: 423 -----SLGGAGIPGPRESGCVLGLR--------------PGAQESPVSWPEGSKQQPLGW 463
G G+PG + GL+ PG P E Q P G
Sbjct: 657 EKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGP 716
Query: 464 SNHQAELEVQTCPEPQRG----AGLP-EPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGT 518
+ + CP Q AG P +PG G+ G + G+ +P + G +G
Sbjct: 717 KGEKGD-GCTACPSLQGTVTDMAGRPGQPGP--KGEQGPE-GVGRPGKPGQPGLPGVQGP 772
Query: 519 AGVRRRTGRPGPAGR 533
G++ G PGP GR
Sbjct: 773 PGLKGVQGEPGPPGR 787
Score = 40.0 bits (92), Expect = 0.005
Identities = 67/278 (24%), Positives = 93/278 (33%), Gaps = 43/278 (15%)
Query: 283 GPARAGSRRGPRSHQ--------KLQP----PPLLPDGKGRGGQASRPSVAPATGSKA-R 329
GPA RGP+ + + QP PP P G+ G P GS+ R
Sbjct: 1132 GPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIR 1191
Query: 330 GKERLTGRARR-----WDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLG--- 381
G L G + L+G++G R P G +G
Sbjct: 1192 GPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPP--------GLMGPPG 1243
Query: 382 -SAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLG 440
P L P+G G+ ++ P + EP ++G G PGP G V
Sbjct: 1244 FKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPG------AMGPQGRPGP--PGHVGP 1295
Query: 441 LRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLP-EPGED----RSGKS 495
P Q P + G + + + P P G P EPG D + G
Sbjct: 1296 PGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPP 1355
Query: 496 GAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
G Q P G+ +G AG + R G PG G+
Sbjct: 1356 GKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGK 1393
Score = 36.6 bits (83), Expect = 0.059
Identities = 66/282 (23%), Positives = 88/282 (31%), Gaps = 51/282 (18%)
Query: 282 EGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRW 341
+GP G Q L P P G G P V ATG ++G R
Sbjct: 790 QGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGR- 848
Query: 342 DMKEDKEELEGQEGSQSTRETPSEE-------EQAQKQSGMEQGRLGSAPAASPAL---- 390
+GQ+G R TP E+ E + + + S +P L
Sbjct: 849 ---------DGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGS 899
Query: 391 ---ASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQE 447
P+GP G +P P P + L G G+PG LG P Q
Sbjct: 900 SWQPGPQGPPG---------IPGPPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQH 950
Query: 448 SPVS----WPEGSKQQPLGWSNHQAELEVQTCPE-------PQRGAGLPEP------GED 490
S +G + P G+ + E Q P Q L P G++
Sbjct: 951 LLKSICGDCVQGQRAHP-GYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDN 1009
Query: 491 RSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G G P G + G G+R G PGP G
Sbjct: 1010 SEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIG 1051
Score = 35.0 bits (79), Expect = 0.17
Identities = 49/185 (26%), Positives = 65/185 (35%), Gaps = 30/185 (16%)
Query: 361 ETPSEEEQAQKQSGMEQGRLGS----APAASPALASPEGPKGESVASTASSVPCSPQEPD 416
E P EE S + G +GS P P EGP G S P P P
Sbjct: 998 ERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPPG----MRGSPGPPGPIGPP 1053
Query: 417 LAPLDLSLGGAGIPGPRESGCVLGL-----RPGAQESPVSWPEGSKQQPL----GWSNHQ 467
P ++G G+PG + + GL PG P +P + L G +
Sbjct: 1054 GFPG--AVGSPGLPGLQGERGLTGLTGDKGEPGPPGQP-GYPGATGPPGLPGIKGERGYT 1110
Query: 468 AELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGR 527
+ P P GLP P G +G PR G+ +G G + + G
Sbjct: 1111 GSAGEKGEPGPPGSEGLPGP----PGPAG------PRGERGPQGNSGEKGDQGFQGQPGF 1160
Query: 528 PGPAG 532
PGP G
Sbjct: 1161 PGPPG 1165
Score = 32.7 bits (73), Expect = 0.85
Identities = 57/226 (25%), Positives = 83/226 (36%), Gaps = 45/226 (19%)
Query: 335 TGRARRWDMKEDKEELEGQ-EGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASP 393
T +ARR + E+ Q EG TR EE Q + GR+ S
Sbjct: 251 TSKARRDTQSNELIEINPQSEGKVYTRCFCLEEPQNSEVDAQLTGRI-----------SQ 299
Query: 394 EGPKGESVASTASSVPCSPQEPDLAPLDLSL---------GGAGIPGPRESGCVLGLRPG 444
+ +G V ++ C P +++L G G+PGP S G R
Sbjct: 300 KAERGAKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGN 359
Query: 445 -----AQESPVSWPEGSKQQP-----LGWSNHQAELEVQTCPEPQRGA-------GLP-E 486
+ ++P+ EG K + LG S L T + Q+G G+P +
Sbjct: 360 DCVRISPDAPLQCAEGPKGEKGESGALGPSG----LPGSTGEKGQKGEKGDGGIKGVPGK 415
Query: 487 PGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
PG D G+ G + P+ + G G AG G PGP G
Sbjct: 416 PGRD--GRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPG 459
Score = 32.7 bits (73), Expect = 0.85
Identities = 59/254 (23%), Positives = 82/254 (32%), Gaps = 30/254 (11%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQAS-RPSVAPATGSKARGKERLTGRARRW 341
GP+ GP +Q P L G+ G+ R PA G G+
Sbjct: 1192 GPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHP 1251
Query: 342 DMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESV 401
+ K + G+ G + P E + QGR G P P GP G+
Sbjct: 1252 GLPGPKGDC-GKPGPPGSTGRPGAEGEPGAMG--PQGRPGP-----PGHVGPPGPPGQPG 1303
Query: 402 ASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPL 461
+ S+V L+ G G PGP PG P + K+ P
Sbjct: 1304 PAGISAVGLKGDRGATGERGLA-GLPGQPGPPG-------HPGPPGEPGTDGAAGKEGPP 1355
Query: 462 GWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRS---RGT 518
G P P+ G + G++G + P + GS G
Sbjct: 1356 GKQGFYGP------PGPKGDPG----AAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGP 1405
Query: 519 AGVRRRTGRPGPAG 532
AG R G PGP+G
Sbjct: 1406 AGERGHPGAPGPSG 1419
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 45.1 bits (105), Expect = 2e-04
Identities = 72/294 (24%), Positives = 116/294 (39%), Gaps = 68/294 (23%)
Query: 233 WDYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRG 292
W ++Q ++ ++ LARLA ++ D +++ + L+ + RA RR
Sbjct: 65 WLHSQQREAEQRAALARLAGQLESMND------VEELTALLRSAGEYEERKLIRAAIRRV 118
Query: 293 PRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEG 352
Q+++ L G+ G+ P +GS+ K R + ++ E +E+
Sbjct: 119 RA--QEIEAATLA--GRLYSGR-------PNSGSREDSKGLAAHRLEQCEVPEREEQ--- 164
Query: 353 QEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASS-VPCS 411
++ ++ ++ TP+ E +Q + L +P G S AS +SS P S
Sbjct: 165 EQQAEVSKPTPTPEGTSQ-----------DVTTVTLLLRAPPGSTSSSPASPSSSPTPAS 213
Query: 412 PQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELE 471
P EP L P E+ C+ PG+ E P S P+
Sbjct: 214 P-EPPLE-------------PAEAQCLTAEVPGSPEPPPSPPK----------------- 242
Query: 472 VQTCPEPQRGAGLPEPGEDRSGK--SGAQQGLAPRSRPTRGGSQRSRG-TAGVR 522
T PEPQ LP K SG ++ A +S PTRG S R AG R
Sbjct: 243 -TTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQS-PTRGPSDTKRADVAGPR 294
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 45.1 bits (105), Expect = 2e-04
Identities = 72/294 (24%), Positives = 116/294 (39%), Gaps = 68/294 (23%)
Query: 233 WDYAQWKQEREQIDLARLARHRDAQGDWRRPWDLDKAKSTLQDCSQLRGEGPARAGSRRG 292
W ++Q ++ ++ LARLA ++ D +++ + L+ + RA RR
Sbjct: 65 WLHSQQREAEQRAALARLAGQLESMND------VEELTALLRSAGEYEERKLIRAAIRRV 118
Query: 293 PRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEG 352
Q+++ L G+ G+ P +GS+ K R + ++ E +E+
Sbjct: 119 RA--QEIEAATLA--GRLYSGR-------PNSGSREDSKGLAAHRLEQCEVPEREEQ--- 164
Query: 353 QEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASS-VPCS 411
++ ++ ++ TP+ E +Q + L +P G S AS +SS P S
Sbjct: 165 EQQAEVSKPTPTPEGTSQ-----------DVTTVTLLLRAPPGSTSSSPASPSSSPTPAS 213
Query: 412 PQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELE 471
P EP L P E+ C+ PG+ E P S P+
Sbjct: 214 P-EPPLE-------------PAEAQCLTAEVPGSPEPPPSPPK----------------- 242
Query: 472 VQTCPEPQRGAGLPEPGEDRSGK--SGAQQGLAPRSRPTRGGSQRSRG-TAGVR 522
T PEPQ LP K SG ++ A +S PTRG S R AG R
Sbjct: 243 -TTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQS-PTRGPSDTKRADVAGPR 294
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 44.7 bits (104), Expect = 2e-04
Identities = 84/333 (25%), Positives = 109/333 (32%), Gaps = 35/333 (10%)
Query: 220 PWSRPVGEPPEAGW---DYAQWKQEREQIDLARLARHRDAQGDWRRPWDLD-KAKSTLQD 275
P PV PP AG + ++ ++ EQ +A L D WD +
Sbjct: 690 PAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVK 749
Query: 276 CSQLRGE----GPARAGSRRGPRSHQKLQPPPLLP---DGKGRGGQASRPSVAPATGSKA 328
L+G+ G R GP L PP LP G G A + P
Sbjct: 750 EGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 809
Query: 329 RGKERLTGR-ARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAAS 387
G++ GR D ED + G G Q TP + ++G G
Sbjct: 810 PGRDGTPGRDGEPGDPGEDGKP--GDTGPQGFPGTPGDVGPKG-----DKGDPGVGERGP 862
Query: 388 PALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL-----R 442
P P GP G S + L+ G G PGP V GL R
Sbjct: 863 PGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGR 922
Query: 443 PGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLA 502
G S V P G P + P P G P G++G + L
Sbjct: 923 FGVNSSDVPGPAGLPGVP----GREGPPGFPGLPGPPGPPGREGP----PGRTGQKGSLG 974
Query: 503 PRSRPTRGGSQRSRGTAGVRRRT---GRPGPAG 532
P GS+ + G AG R + G PGPAG
Sbjct: 975 EAGAPGHKGSKGAPGPAGARGESGLAGAPGPAG 1007
Score = 37.7 bits (86), Expect = 0.026
Identities = 52/200 (26%), Positives = 71/200 (35%), Gaps = 30/200 (15%)
Query: 351 EGQEGSQSTRETPSEEEQAQKQSGM---EQGRLGSAPAAS---PALASPEGPKGESVAST 404
+G GS+ R +P + + + + + G LG A + P P GP G
Sbjct: 1159 KGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 1218
Query: 405 ASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWS 464
P P P + L G G PG G + PG P P G P+ S
Sbjct: 1219 EIGFPGRPGRPGMNGLK---GEKGEPGDASLGFGMRGMPGPPGPP--GPPGPPGTPVYDS 1273
Query: 465 NHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTR------------GGS 512
N AE + P P GLP + G GA+ + P P + G
Sbjct: 1274 NVFAE---SSRPGPP---GLPG-NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGE 1326
Query: 513 QRSRGTAGVRRRTGRPGPAG 532
+ RG AG + G PG G
Sbjct: 1327 KGDRGDAGQKGERGEPGGGG 1346
Score = 34.3 bits (77), Expect = 0.29
Identities = 66/276 (23%), Positives = 90/276 (32%), Gaps = 41/276 (14%)
Query: 294 RSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA-------RGKERLTG-------RAR 339
RS Q PP LP KG G P G+ G+E + G R
Sbjct: 1041 RSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGS 1100
Query: 340 RWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGM------EQGRLGSA----PAASPA 389
R + + ++ GQ G P +Q G +GR G A PA
Sbjct: 1101 RGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKG 1160
Query: 390 LASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGA-GIPGPRESGCVLGLRPGAQES 448
+G +G P S PD L + GA G PG R G RPG +
Sbjct: 1161 NLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG-RPG-YKG 1218
Query: 449 PVSWP-----------EGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGA 497
+ +P +G K +P + ++ P P G P P S
Sbjct: 1219 EIGFPGRPGRPGMNGLKGEKGEP---GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNV 1275
Query: 498 QQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
+ P G+Q G G + G PGP G+
Sbjct: 1276 FAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 1311
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 44.7 bits (104), Expect = 2e-04
Identities = 84/333 (25%), Positives = 109/333 (32%), Gaps = 35/333 (10%)
Query: 220 PWSRPVGEPPEAGW---DYAQWKQEREQIDLARLARHRDAQGDWRRPWDLD-KAKSTLQD 275
P PV PP AG + ++ ++ EQ +A L D WD +
Sbjct: 275 PAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVK 334
Query: 276 CSQLRGE----GPARAGSRRGPRSHQKLQPPPLLP---DGKGRGGQASRPSVAPATGSKA 328
L+G+ G R GP L PP LP G G A + P
Sbjct: 335 EGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 394
Query: 329 RGKERLTGR-ARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAAS 387
G++ GR D ED + G G Q TP + ++G G
Sbjct: 395 PGRDGTPGRDGEPGDPGEDGKP--GDTGPQGFPGTPGDVGPKG-----DKGDPGVGERGP 447
Query: 388 PALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL-----R 442
P P GP G S + L+ G G PGP V GL R
Sbjct: 448 PGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGR 507
Query: 443 PGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLA 502
G S V P G P + P P G P G++G + L
Sbjct: 508 FGVNSSDVPGPAGLPGVP----GREGPPGFPGLPGPPGPPGREGP----PGRTGQKGSLG 559
Query: 503 PRSRPTRGGSQRSRGTAGVRRRT---GRPGPAG 532
P GS+ + G AG R + G PGPAG
Sbjct: 560 EAGAPGHKGSKGAPGPAGARGESGLAGAPGPAG 592
Score = 37.7 bits (86), Expect = 0.026
Identities = 52/200 (26%), Positives = 71/200 (35%), Gaps = 30/200 (15%)
Query: 351 EGQEGSQSTRETPSEEEQAQKQSGM---EQGRLGSAPAAS---PALASPEGPKGESVAST 404
+G GS+ R +P + + + + + G LG A + P P GP G
Sbjct: 744 KGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 803
Query: 405 ASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWS 464
P P P + L G G PG G + PG P P G P+ S
Sbjct: 804 EIGFPGRPGRPGMNGLK---GEKGEPGDASLGFGMRGMPGPPGPP--GPPGPPGTPVYDS 858
Query: 465 NHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTR------------GGS 512
N AE + P P GLP + G GA+ + P P + G
Sbjct: 859 NVFAE---SSRPGPP---GLPG-NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGE 911
Query: 513 QRSRGTAGVRRRTGRPGPAG 532
+ RG AG + G PG G
Sbjct: 912 KGDRGDAGQKGERGEPGGGG 931
Score = 34.3 bits (77), Expect = 0.29
Identities = 66/276 (23%), Positives = 90/276 (32%), Gaps = 41/276 (14%)
Query: 294 RSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA-------RGKERLTG-------RAR 339
RS Q PP LP KG G P G+ G+E + G R
Sbjct: 626 RSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGS 685
Query: 340 RWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGM------EQGRLGSA----PAASPA 389
R + + ++ GQ G P +Q G +GR G A PA
Sbjct: 686 RGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKG 745
Query: 390 LASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGA-GIPGPRESGCVLGLRPGAQES 448
+G +G P S PD L + GA G PG R G RPG +
Sbjct: 746 NLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG-RPG-YKG 803
Query: 449 PVSWP-----------EGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGA 497
+ +P +G K +P + ++ P P G P P S
Sbjct: 804 EIGFPGRPGRPGMNGLKGEKGEP---GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNV 860
Query: 498 QQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
+ P G+Q G G + G PGP G+
Sbjct: 861 FAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 896
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 44.7 bits (104), Expect = 2e-04
Identities = 84/333 (25%), Positives = 109/333 (32%), Gaps = 35/333 (10%)
Query: 220 PWSRPVGEPPEAGW---DYAQWKQEREQIDLARLARHRDAQGDWRRPWDLD-KAKSTLQD 275
P PV PP AG + ++ ++ EQ +A L D WD +
Sbjct: 455 PAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVK 514
Query: 276 CSQLRGE----GPARAGSRRGPRSHQKLQPPPLLP---DGKGRGGQASRPSVAPATGSKA 328
L+G+ G R GP L PP LP G G A + P
Sbjct: 515 EGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 574
Query: 329 RGKERLTGR-ARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAAS 387
G++ GR D ED + G G Q TP + ++G G
Sbjct: 575 PGRDGTPGRDGEPGDPGEDGKP--GDTGPQGFPGTPGDVGPKG-----DKGDPGVGERGP 627
Query: 388 PALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGL-----R 442
P P GP G S + L+ G G PGP V GL R
Sbjct: 628 PGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGR 687
Query: 443 PGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLA 502
G S V P G P + P P G P G++G + L
Sbjct: 688 FGVNSSDVPGPAGLPGVP----GREGPPGFPGLPGPPGPPGREGP----PGRTGQKGSLG 739
Query: 503 PRSRPTRGGSQRSRGTAGVRRRT---GRPGPAG 532
P GS+ + G AG R + G PGPAG
Sbjct: 740 EAGAPGHKGSKGAPGPAGARGESGLAGAPGPAG 772
Score = 37.7 bits (86), Expect = 0.026
Identities = 52/200 (26%), Positives = 71/200 (35%), Gaps = 30/200 (15%)
Query: 351 EGQEGSQSTRETPSEEEQAQKQSGM---EQGRLGSAPAAS---PALASPEGPKGESVAST 404
+G GS+ R +P + + + + + G LG A + P P GP G
Sbjct: 924 KGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKG 983
Query: 405 ASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWS 464
P P P + L G G PG G + PG P P G P+ S
Sbjct: 984 EIGFPGRPGRPGMNGLK---GEKGEPGDASLGFGMRGMPGPPGPP--GPPGPPGTPVYDS 1038
Query: 465 NHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTR------------GGS 512
N AE + P P GLP + G GA+ + P P + G
Sbjct: 1039 NVFAE---SSRPGPP---GLPG-NQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGE 1091
Query: 513 QRSRGTAGVRRRTGRPGPAG 532
+ RG AG + G PG G
Sbjct: 1092 KGDRGDAGQKGERGEPGGGG 1111
Score = 34.3 bits (77), Expect = 0.29
Identities = 66/276 (23%), Positives = 90/276 (32%), Gaps = 41/276 (14%)
Query: 294 RSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA-------RGKERLTG-------RAR 339
RS Q PP LP KG G P G+ G+E + G R
Sbjct: 806 RSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGS 865
Query: 340 RWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGM------EQGRLGSA----PAASPA 389
R + + ++ GQ G P +Q G +GR G A PA
Sbjct: 866 RGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKG 925
Query: 390 LASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGA-GIPGPRESGCVLGLRPGAQES 448
+G +G P S PD L + GA G PG R G RPG +
Sbjct: 926 NLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYG-RPG-YKG 983
Query: 449 PVSWP-----------EGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGEDRSGKSGA 497
+ +P +G K +P + ++ P P G P P S
Sbjct: 984 EIGFPGRPGRPGMNGLKGEKGEP---GDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNV 1040
Query: 498 QQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAGR 533
+ P G+Q G G + G PGP G+
Sbjct: 1041 FAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 1076
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 44.7 bits (104), Expect = 2e-04
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 274 QDCSQLRGEGPARAGSRRG---PRSHQKL---QPPPLLPDGKGRGGQASRPSVAPATGSK 327
Q + +G+ A A +RG PR Q+ +P P P G+ +G + PS A ++
Sbjct: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
Query: 328 ARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEE 366
A G++R GR R+W ++ ++ + + T ET S+E
Sbjct: 70 ATGEKRPRGRPRKW----PQQVVQKKPAQEETEETSSQE 104
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 44.7 bits (104), Expect = 2e-04
Identities = 78/283 (27%), Positives = 97/283 (34%), Gaps = 53/283 (18%)
Query: 283 GPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWD 342
GPA +GPR Q L P + G G +P + TG + G + L G R
Sbjct: 743 GPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGL---TGPQ--GPQGLPGTPGRPG 797
Query: 343 MKEDKE---ELEGQEGSQS-TRETPSEEEQAQKQSGMEQGRLGSAPAASPA------LAS 392
+K + ++ EGS T P A G + PA P L
Sbjct: 798 IKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQG 857
Query: 393 PEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGP--------RESGCVLGLRPG 444
P GP G S+P P P P G G+PGP S L PG
Sbjct: 858 PPGPPGPR-GPPGPSIP-GPPGPRGPP------GEGLPGPPGPPGSFLSNSETFLSGPPG 909
Query: 445 AQESPVSWPEGSKQQPLGWSNHQAE---------------LEVQTCPEPQRGAGLPEPGE 489
P P+G Q P G HQ E L +Q P P G P
Sbjct: 910 PPGPP--GPKGD-QGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQG---PKG 963
Query: 490 DRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
D+ G G L S P+ GGS + +G G PGP G
Sbjct: 964 DK-GDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPG 1005
Score = 42.0 bits (97), Expect = 0.001
Identities = 67/289 (23%), Positives = 97/289 (33%), Gaps = 51/289 (17%)
Query: 246 DLARLARHRDAQGDWRRPWDLDKAKSTL-QDCSQLRGE-GPARAGSRRGPRSHQKLQPPP 303
DL ++ H D+Q + W + K + Q+ LRG GP GP+ + P
Sbjct: 534 DLDKIGLHSDSQEEL---WMFVRKKLMMEQENGNLRGSPGPKGDMGSPGPKGDRGFPGTP 590
Query: 304 LLPDGKGRGGQASRPSVAPATGSKARGKERLTGRARRWDMKEDKEELEGQEGSQSTRETP 363
+P G G + G G E G+ R EG G + P
Sbjct: 591 GIPGPLGHPGPQGPKGQKGSVGDP--GMEGPMGQRGR----------EGPMGPRGEAGPP 638
Query: 364 SEEEQAQKQSGMEQGRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLS 423
E+ ++ + E G P P + GPKG S+ S P P P L
Sbjct: 639 GSGEKGERGAAGEPG-----PHGPPGVPGSVGPKG----SSGSPGPQGPPGP--VGLQGL 687
Query: 424 LGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAG 483
G G+PG + +G P G Q E + G
Sbjct: 688 RGEVGLPGVKGDKGPMG-------------------PPGPKGDQGEKGPRGLTGEPGMRG 728
Query: 484 LPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
LP G+ GA+ + P G + +G G+ G PGP+G
Sbjct: 729 LP----GAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSG 773
Score = 41.6 bits (96), Expect = 0.002
Identities = 63/222 (28%), Positives = 81/222 (36%), Gaps = 50/222 (22%)
Query: 317 RPSVAPATGSKAR-GKERLTGRARRWDMKEDKEELEGQEGSQSTRETPSEEEQ---AQKQ 372
R S+ P S R K+RL G A DK L S+EE +K+
Sbjct: 506 RRSILPYGDSMDRIEKDRLQGMAPAAGADLDKIGLHSD----------SQEELWMFVRKK 555
Query: 373 SGMEQ--GRLGSAPAASPALASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIP 430
MEQ G L +P + SP GPKG+ P +P P G G P
Sbjct: 556 LMMEQENGNLRGSPGPKGDMGSP-GPKGDR------GFPGTPGIP---------GPLGHP 599
Query: 431 GPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRGAGLPEPGED 490
GP+ P Q+ V P + P+G + P RG P PG
Sbjct: 600 GPQG--------PKGQKGSVGDP--GMEGPMGQRGREG-------PMGPRGEAGP-PGSG 641
Query: 491 RSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
G+ GA P P GS +G++G G PGP G
Sbjct: 642 EKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVG 683
Score = 30.8 bits (68), Expect = 3.2
Identities = 39/156 (25%), Positives = 48/156 (30%), Gaps = 16/156 (10%)
Query: 282 EGPARAGSRRGPRSHQKLQPP-PLLPDGKGRGGQASRPSVAPATGSKARGKERLT----G 336
+GP RGP PP P P G+G G P GS E G
Sbjct: 856 QGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPP------GSFLSNSETFLSGPPG 909
Query: 337 RARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASPEGP 396
K D+ G G Q + P G+ P P P+G
Sbjct: 910 PPGPPGPKGDQGP-PGPRGHQGEQGLPGFSTSGSSSFGLNL----QGPPGPPGPQGPKGD 964
Query: 397 KGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGP 432
KG+ A +P P E + G G PGP
Sbjct: 965 KGDPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGP 1000
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 44.3 bits (103), Expect = 3e-04
Identities = 71/285 (24%), Positives = 102/285 (35%), Gaps = 54/285 (18%)
Query: 277 SQLRGEGPARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKARGKERLTG 336
S++ GP + GP L+ P + +G G P + +G GK G
Sbjct: 120 SRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQG 179
Query: 337 RARRWDMKEDKEELEGQEGSQSTRETPSEEEQAQKQSGMEQGRLGSAPAASPALASP--E 394
+G+ G Q P + + +G+ Q L AP A P
Sbjct: 180 -------VPGPPGFQGEPGPQGEPGPPGDRG-LKGDNGVGQPGLPGAPGQGGAPGPPGLP 231
Query: 395 GPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLR----------PG 444
GP G +P +P + + G G+PGPR +G + PG
Sbjct: 232 GPAGLGKPGL-DGLPGAPGDKGES------GPPGVPGPRGEPGAVGPKGPPGVDGVGVPG 284
Query: 445 AQESP-VSWPEGSKQQP--------LGWSNHQAELEVQTCPEPQRG-AGLP-------EP 487
A P P G+K +P +G + + + P+ RG AG+P EP
Sbjct: 285 AAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYG--MPGLPGPKGDRGPAGVPGLLGDRGEP 342
Query: 488 GEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
GED QGL GG G+AG+ R G PGP G
Sbjct: 343 GEDGEPGEQGPQGL--------GGPPGLPGSAGLPGRRGPPGPKG 379
Score = 40.4 bits (93), Expect = 0.004
Identities = 79/298 (26%), Positives = 100/298 (33%), Gaps = 75/298 (25%)
Query: 284 PARAGSRRGPRSHQKLQPPPLLPDGKGRGGQASRPSVAPATGSKA----RGKERLTGRAR 339
P G R P + PP + DG G G A P +G+K RG L G
Sbjct: 257 PGVPGPRGEPGAVGPKGPPGV--DGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTG 314
Query: 340 RW-----DMKEDKEELEGQEGSQSTRETPSEE----EQAQKQSGMEQGRLGSAPAASPAL 390
K D+ G G R P E+ EQ + G G GSA P
Sbjct: 315 YGMPGLPGPKGDRGPA-GVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSA--GLPGR 371
Query: 391 ASPEGPKGESVASTASSVPCSPQEPDLAPLDLSLGGAGIPGPRESGCVLGLRPGAQESPV 450
P GPKGE+ VP D P L+ G G+PG R GL PGA P
Sbjct: 372 RGPPGPKGEAGPGGPPGVPGI--RGDQGPSGLA-GKPGVPGER------GL-PGAHGPP- 420
Query: 451 SWPEGSKQQP-----------LGWSNHQAELEVQTCPEPQRGAGLP-------------- 485
P G K +P G + +L + P + +G+P
Sbjct: 421 -GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGL 479
Query: 486 -----------EPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRRRTGRPGPAG 532
PGE R+G+ G P P G+ G+ G PGP G
Sbjct: 480 PGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVP---------GSPGITGPPGPPGPPG 528
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,751,666
Number of Sequences: 37866
Number of extensions: 1622563
Number of successful extensions: 12319
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 845
Number of HSP's that attempted gapping in prelim test: 8828
Number of HSP's gapped (non-prelim): 2988
length of query: 534
length of database: 18,247,518
effective HSP length: 107
effective length of query: 427
effective length of database: 14,195,856
effective search space: 6061630512
effective search space used: 6061630512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.