Guide to the Human Genome
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Name: KRT38 Sequence: fasta or formatted (456aa) NCBI GI: 15431318
Description:

keratin 38

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         35           2
 C cysteine            6.1         28           2
 D aspartate           4.2         19           2
 E glutamate          10.7         49           2
 F phenylalanine       1.3          6           1
 G glycine             4.6         21           1
 H histidine           1.8          8           1
 I isoleucine          4.4         20           1
 K lysine              3.7         17           1
 L leucine            11.8         54           2
 M methionine          1.8          8           1
 N asparagine          4.8         22           1
 P proline             4.8         22           2
 Q glutamine           7.0         32           2
 R arginine            5.5         25           1
 S serine              7.9         36           4
 T threonine           5.9         27           2
 V valine              3.9         18           1
 W tryptophan          0.2          1           1
 Y tyrosine            1.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 38 
KRT37                 0.884   keratin 37 
KRT31                 0.523   keratin 31 
KRT33B                0.519   type I hair keratin 3B 
KRT33A                0.518   keratin 33A 
KRT34                 0.501   keratin 34 
KRT32                 0.487   keratin 32 
KRT36                 0.485   keratin 36 
KRT35                 0.481   keratin 35 
KRT40                 0.432   type I hair keratin KA36 
KRT39                 0.410   type I hair keratin KA35 
KRT17                 0.334   keratin 17 
KRT14                 0.330   keratin 14 
KRT15                 0.327   keratin 15 
KRT13                 0.326   keratin 13 isoform a 
KRT16                 0.326   keratin 16 
KRT13                 0.320   keratin 13 isoform b 
KRT19                 0.318   keratin 19 
KRT10                 0.296   keratin 10 
KRT12                 0.285   keratin 12 
KRT20                 0.281   keratin 20 
KRT28                 0.265   keratin 25D 
KRT24                 0.260   keratin 24 
KRT27                 0.255   keratin 27 
KRT18                 0.250   keratin 18 
KRT18                 0.250   keratin 18 
KRT23                 0.246   keratin 23 
KRT25                 0.246   keratin 25 
KRT9                  0.239   keratin 9 
KRT26                 0.238   keratin 26 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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