Guide to the Human Genome
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Name: KRT25 Sequence: fasta or formatted (450aa) NCBI GI: 31559829
Description:

keratin 25

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         34           2
 C cysteine            2.2         10           1
 D aspartate           4.9         22           2
 E glutamate           9.6         43           2
 F phenylalanine       1.8          8           1
 G glycine             8.7         39           3
 H histidine           1.8          8           1
 I isoleucine          4.2         19           2
 K lysine              5.3         24           2
 L leucine            11.6         52           2
 M methionine          1.6          7           1
 N asparagine          5.8         26           2
 P proline             1.6          7           1
 Q glutamine           5.6         25           3
 R arginine            4.9         22           2
 S serine              8.9         40           3
 T threonine           6.2         28           2
 V valine              4.4         20           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 25 
KRT27                 0.801   keratin 27 
KRT28                 0.733   keratin 25D 
KRT26                 0.677   keratin 26 
KRT24                 0.494   keratin 24 
KRT10                 0.492   keratin 10 
KRT12                 0.457   keratin 12 
KRT16                 0.444   keratin 16 
KRT14                 0.438   keratin 14 
KRT15                 0.435   keratin 15 
KRT13                 0.422   keratin 13 isoform b 
KRT13                 0.422   keratin 13 isoform a 
KRT17                 0.417   keratin 17 
KRT19                 0.398   keratin 19 
KRT9                  0.363   keratin 9 
KRT36                 0.351   keratin 36 
KRT35                 0.328   keratin 35 
KRT20                 0.323   keratin 20 
KRT32                 0.315   keratin 32 
KRT33A                0.308   keratin 33A 
KRT31                 0.308   keratin 31 
KRT33B                0.307   type I hair keratin 3B 
KRT34                 0.288   keratin 34 
KRT40                 0.287   type I hair keratin KA36 
KRT39                 0.285   type I hair keratin KA35 
KRT18                 0.284   keratin 18 
KRT18                 0.284   keratin 18 
KRT23                 0.284   keratin 23 
KRT37                 0.259   keratin 37 
KRT38                 0.256   keratin 38 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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