Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KRT12 Sequence: fasta or formatted (494aa) NCBI GI: 4557699
Description:

keratin 12

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         38           2
 C cysteine            0.4          2           1
 D aspartate           5.5         27           1
 E glutamate           9.7         48           2
 F phenylalanine       2.4         12           1
 G glycine            11.1         55           3
 H histidine           0.4          2           1
 I isoleucine          3.6         18           2
 K lysine              4.0         20           2
 L leucine            11.5         57           3
 M methionine          3.0         15           1
 N asparagine          4.5         22           2
 P proline             1.4          7           1
 Q glutamine           5.9         29           2
 R arginine            6.3         31           2
 S serine             10.9         54           3
 T threonine           4.3         21           1
 V valine              4.5         22           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.4         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 12 
KRT10                 0.498   keratin 10 
KRT24                 0.497   keratin 24 
KRT15                 0.483   keratin 15 
KRT16                 0.479   keratin 16 
KRT14                 0.478   keratin 14 
KRT17                 0.475   keratin 17 
KRT13                 0.472   keratin 13 isoform a 
KRT13                 0.467   keratin 13 isoform b 
KRT27                 0.455   keratin 27 
KRT28                 0.447   keratin 25D 
KRT19                 0.439   keratin 19 
KRT25                 0.426   keratin 25 
KRT9                  0.405   keratin 9 
KRT26                 0.399   keratin 26 
KRT20                 0.361   keratin 20 
KRT36                 0.351   keratin 36 
KRT35                 0.348   keratin 35 
KRT33A                0.330   keratin 33A 
KRT32                 0.329   keratin 32 
KRT31                 0.329   keratin 31 
KRT33B                0.323   type I hair keratin 3B 
KRT23                 0.317   keratin 23 
KRT34                 0.313   keratin 34 
KRT18                 0.300   keratin 18 
KRT18                 0.300   keratin 18 
KRT40                 0.293   type I hair keratin KA36 
KRT39                 0.278   type I hair keratin KA35 
KRT38                 0.276   keratin 38 
KRT37                 0.276   keratin 37 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press