Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KRT17 Sequence: fasta or formatted (432aa) NCBI GI: 4557701
Description:

keratin 17

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         31           2
 C cysteine            1.2          5           1
 D aspartate           4.6         20           2
 E glutamate          11.1         48           3
 F phenylalanine       1.6          7           2
 G glycine             8.6         37           3
 H histidine           0.7          3           1
 I isoleucine          4.4         19           1
 K lysine              4.6         20           2
 L leucine            11.3         49           2
 M methionine          2.3         10           1
 N asparagine          4.4         19           1
 P proline             0.9          4           1
 Q glutamine           6.7         29           2
 R arginine            7.4         32           2
 S serine              8.8         38           4
 T threonine           5.8         25           2
 V valine              4.6         20           1
 W tryptophan          0.5          2           1
 Y tyrosine            3.2         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 17 
KRT14                 0.756   keratin 14 
KRT16                 0.683   keratin 16 
KRT15                 0.605   keratin 15 
KRT13                 0.578   keratin 13 isoform b 
KRT13                 0.578   keratin 13 isoform a 
KRT19                 0.578   keratin 19 
KRT12                 0.542   keratin 12 
KRT10                 0.539   keratin 10 
KRT36                 0.501   keratin 36 
KRT24                 0.496   keratin 24 
KRT27                 0.488   keratin 27 
KRT28                 0.479   keratin 25D 
KRT35                 0.470   keratin 35 
KRT20                 0.459   keratin 20 
KRT25                 0.443   keratin 25 
KRT9                  0.431   keratin 9 
KRT33A                0.429   keratin 33A 
KRT33B                0.429   type I hair keratin 3B 
KRT31                 0.429   keratin 31 
KRT34                 0.427   keratin 34 
KRT32                 0.419   keratin 32 
KRT26                 0.419   keratin 26 
KRT40                 0.385   type I hair keratin KA36 
KRT18                 0.374   keratin 18 
KRT18                 0.374   keratin 18 
KRT39                 0.373   type I hair keratin KA35 
KRT38                 0.369   keratin 38 
KRT37                 0.367   keratin 37 
KRT23                 0.362   keratin 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press