Guide to the Human Genome
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Name: KRT23 Sequence: fasta or formatted (422aa) NCBI GI: 27894339
Description:

keratin 23

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         22           2
 C cysteine            0.7          3           1
 D aspartate           4.5         19           2
 E glutamate          10.7         45           3
 F phenylalanine       1.9          8           1
 G glycine             6.4         27           3
 H histidine           3.8         16           2
 I isoleucine          5.5         23           2
 K lysine              7.1         30           3
 L leucine             9.5         40           2
 M methionine          3.1         13           1
 N asparagine          4.3         18           2
 P proline             3.1         13           3
 Q glutamine           6.4         27           2
 R arginine            6.2         26           2
 S serine              8.1         34           2
 T threonine           6.2         26           2
 V valine              4.0         17           1
 W tryptophan          0.9          4           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin 23 
KRT19                 0.361   keratin 19 
KRT17                 0.359   keratin 17 
KRT15                 0.359   keratin 15 
KRT12                 0.359   keratin 12 
KRT16                 0.357   keratin 16 
KRT20                 0.351   keratin 20 
KRT14                 0.350   keratin 14 
KRT13                 0.346   keratin 13 isoform a 
KRT13                 0.346   keratin 13 isoform b 
KRT10                 0.324   keratin 10 
KRT36                 0.323   keratin 36 
KRT35                 0.323   keratin 35 
KRT24                 0.322   keratin 24 
KRT28                 0.319   keratin 25D 
KRT27                 0.317   keratin 27 
KRT9                  0.304   keratin 9 
KRT25                 0.300   keratin 25 
KRT32                 0.298   keratin 32 
KRT26                 0.298   keratin 26 
KRT33A                0.297   keratin 33A 
KRT31                 0.296   keratin 31 
KRT33B                0.292   type I hair keratin 3B 
KRT34                 0.291   keratin 34 
KRT18                 0.281   keratin 18 
KRT18                 0.281   keratin 18 
KRT38                 0.270   keratin 38 
KRT37                 0.270   keratin 37 
KRT40                 0.263   type I hair keratin KA36 
KRT39                 0.244   type I hair keratin KA35 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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