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Search of human proteins with 15082240
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15082240 urocortin 2 preproprotein [Homo sapiens]
(112 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15082240 urocortin 2 preproprotein [Homo sapiens] 226 2e-60
gi|45238845 urocortin 3 preproprotein [Homo sapiens] 39 0.001
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 35 0.017
gi|83977459 pleckstrin homology-like domain, family A, member 1 ... 34 0.029
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 33 0.064
gi|239751395 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.083
gi|239745904 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.083
gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens] 32 0.14
gi|242117996 hypothetical protein LOC392307 [Homo sapiens] 31 0.19
gi|4507803 urocortin preproprotein [Homo sapiens] 31 0.19
gi|169211436 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 31 0.24
gi|110618250 mucin and cadherin-like isoform 3 [Homo sapiens] 31 0.24
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 31 0.24
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 30 0.32
gi|239746599 PREDICTED: hypothetical protein XP_002343795 [Homo ... 30 0.32
gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] 30 0.41
gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens] 30 0.41
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 30 0.41
gi|239757739 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239752232 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|89276766 trophinin isoform 5 [Homo sapiens] 30 0.41
gi|29540551 trophinin isoform 2 [Homo sapiens] 30 0.41
gi|29540541 trophinin isoform 2 [Homo sapiens] 30 0.41
gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens] 30 0.41
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 30 0.54
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 30 0.54
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 30 0.54
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 30 0.54
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 30 0.54
>gi|15082240 urocortin 2 preproprotein [Homo sapiens]
Length = 112
Score = 226 bits (577), Expect = 2e-60
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MTRCALLLLMVLMLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQS 60
MTRCALLLLMVLMLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQS
Sbjct: 1 MTRCALLLLMVLMLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQS 60
Query: 61 HCSPTRHPGSRIVLSLDVPIGLLQILLEQARARAAREQATTNARILARVGHC 112
HCSPTRHPGSRIVLSLDVPIGLLQILLEQARARAAREQATTNARILARVGHC
Sbjct: 61 HCSPTRHPGSRIVLSLDVPIGLLQILLEQARARAAREQATTNARILARVGHC 112
>gi|45238845 urocortin 3 preproprotein [Homo sapiens]
Length = 161
Score = 38.5 bits (88), Expect = 0.001
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 70 SRIVLSLDVPIGLLQILLEQARARAAREQATTNARILARVG 110
++ LSLDVP ++ +L A+A+ R QA NA ++A++G
Sbjct: 118 TKFTLSLDVPTNIMNLLFNIAKAKNLRAQAAANAHLMAQIG 158
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 21 PVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPG 69
P TP P P + P TP PAA+ P+AAP + + T PG
Sbjct: 12 PATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPG 60
>gi|83977459 pleckstrin homology-like domain, family A, member 1
[Homo sapiens]
Length = 401
Score = 33.9 bits (76), Expect = 0.029
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 21 PVTPIPTFQLRPQNSPQTTPRPAASESPSAAP-TWPWAAQSHCSPTRHP 68
P P P QL+PQ PQ P+P P P P Q H P HP
Sbjct: 308 PSQPQPQPQLQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHP 356
>gi|153791535 general control of amino acid synthesis 5-like 2
[Homo sapiens]
Length = 837
Score = 32.7 bits (73), Expect = 0.064
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 23 TPIPTFQLRPQNSPQTTPRPAASESPSAAP 52
TP P Q RP SP P P + SP++AP
Sbjct: 9 TPAPAAQPRPLQSPAPAPTPTPAPSPASAP 38
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 24 PIPTFQLRPQNSPQTTPRPAASESPSAAP 52
P PT P ++P TP PA + +P+AAP
Sbjct: 26 PTPTPAPSPASAPIPTPTPAPAPAPAAAP 54
>gi|239751395 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 32.3 bits (72), Expect = 0.083
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+TP T L P N+P TP + +PS+ PT +PT P SR +L+
Sbjct: 104 LTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPT----LTPSSTPTLTPSSRPILT 153
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQS----HCSPTRHPGSRIVLS 75
+TP T L P N+P TP + +PS+ PT +++ +PT P SR +L+
Sbjct: 112 LTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILT 169
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 22 VTPIPTFQLRPQNSPQTTPRP--AASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+TP T L P ++P TP+P S +P+ P+ P +PT P + L+
Sbjct: 66 LTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLT 121
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 13 MLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRI 72
+L R +TP T L P ++P TP + +PS+ P ++ +PT P SR
Sbjct: 167 ILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSS----TPTLTPSSRP 222
Query: 73 VLS 75
+L+
Sbjct: 223 ILT 225
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 13 MLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+L R +TP T L P N+P TP + +PS PT ++ +P+ P
Sbjct: 239 ILTRSSTPTLTPSSTPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTP 294
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPT 53
+TP T L P N+P TP + +PS+ PT
Sbjct: 50 LTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPT 81
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPT 53
+TP T L P N+P TP + +PS+ PT
Sbjct: 264 LTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPT 295
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 22 VTPIPTFQLRPQNSPQTTP--RP--AASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+TP T L P ++P TP RP S +P+ P+ +PT P SR +L+
Sbjct: 184 LTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILT 241
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 13 MLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPT 53
+L R +TP L P N+P TP + +PS+ PT
Sbjct: 33 ILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSSTPT 73
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 17 VLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+L TP T RP + +TP S +P+ P+ +PT P SR +L+
Sbjct: 151 ILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILT 209
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 30 LRPQNSPQTTPRPAASESPSAAPTWPWAAQ----SHCSPTRHPGS 70
L P N+P TP + +PS+ PT ++Q +PT P S
Sbjct: 2 LTPSNTPTLTPSSPPTLTPSSTPTLTPSSQPILTRSSTPTLTPSS 46
>gi|239745904 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 306
Score = 32.3 bits (72), Expect = 0.083
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+TP T L P N+P TP + +PS+ PT +PT P SR +L+
Sbjct: 104 LTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPT----LTPSSTPTLTPSSRPILT 153
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQS----HCSPTRHPGSRIVLS 75
+TP T L P N+P TP + +PS+ PT +++ +PT P SR +L+
Sbjct: 112 LTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILT 169
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 22 VTPIPTFQLRPQNSPQTTPRP--AASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+TP T L P ++P TP+P S +P+ P+ P +PT P + L+
Sbjct: 66 LTPSSTPTLTPSSTPTLTPQPILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLT 121
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 13 MLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRI 72
+L R +TP T L P ++P TP + +PS+ P ++ +PT P SR
Sbjct: 167 ILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSS----TPTLTPSSRP 222
Query: 73 VLS 75
+L+
Sbjct: 223 ILT 225
Score = 29.3 bits (64), Expect = 0.71
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 13 MLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+L R +TP T L P N+P TP + +PS PT ++ +P+ P
Sbjct: 239 ILTRSSTPTLTPSSTPTLTPSNTPTLTPSNTPTLTPSNTPTLTPSSTPTLTPSSTP 294
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPT 53
+TP T L P N+P TP + +PS+ PT
Sbjct: 50 LTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPT 81
Score = 28.9 bits (63), Expect = 0.92
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPT 53
+TP T L P N+P TP + +PS+ PT
Sbjct: 264 LTPSNTPTLTPSNTPTLTPSSTPTLTPSSTPT 295
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 22 VTPIPTFQLRPQNSPQTTP--RP--AASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+TP T L P ++P TP RP S +P+ P+ +PT P SR +L+
Sbjct: 184 LTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSRPILTPSSTPTLTPSSRPILT 241
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 13 MLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPT 53
+L R +TP L P N+P TP + +PS+ PT
Sbjct: 33 ILTRSSTPTLTPSSPPTLTPSNTPTLTPSNTPTLTPSSTPT 73
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 17 VLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
+L TP T RP + +TP S +P+ P+ +PT P SR +L+
Sbjct: 151 ILTRSSTPTLTPSSRPILTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILT 209
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 30 LRPQNSPQTTPRPAASESPSAAPTWPWAAQ----SHCSPTRHPGS 70
L P N+P TP + +PS+ PT ++Q +PT P S
Sbjct: 2 LTPSNTPTLTPSSPPTLTPSSTPTLTPSSQPILTRSSTPTLTPSS 46
>gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens]
Length = 1498
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 37 QTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLSLDVPIGLLQILLEQARARAAR 96
+T P PA E+P+ +P A C+P G V S G LQ LL +AR +
Sbjct: 1295 ETVPVPAGQENPAMSP----AVSQPCTPRASAGHVAVSSPTPETGPLQRLLPKARPMSLS 1350
Query: 97 EQATTNA 103
A N+
Sbjct: 1351 TIAILNS 1357
>gi|242117996 hypothetical protein LOC392307 [Homo sapiens]
Length = 402
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 21 PVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCS--PTRH 67
P+ P P+ +SP+T P+ SE+PS PT+ + S S P +H
Sbjct: 57 PLVPSPSQIPLEAHSPETHQEPSISETPSETPTYEASLDSPISVVPEKH 105
>gi|4507803 urocortin preproprotein [Homo sapiens]
Length = 124
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 74 LSLDVPIGLLQILLEQARARAAREQATTNARILARVG 110
LS+D+ LL+ LLE AR ++ RE+A N I VG
Sbjct: 87 LSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVG 123
>gi|169211436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 280
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+TP T L P N+P TP + +PS+ PT ++ +P+ P
Sbjct: 78 LTPCSTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTP 124
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+TP T L P ++P TP + +PS+ PT ++ +P+ P
Sbjct: 110 LTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTRSSTPTLTPSSTP 156
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 23 TPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLS 75
TP T P +P +TP S +P+ P+ +PT P SR +L+
Sbjct: 139 TPTLTRSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILT 191
Score = 28.9 bits (63), Expect = 0.92
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 13 MLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRI 72
+L R +TP T L P ++P TP + PS+ PT +PT P SR
Sbjct: 189 ILTRSSTPTLTPSSTPTLTPSSTPTLTPSNTPTLIPSSTPT----LTPSSTPTLTPSSRP 244
Query: 73 VLS 75
L+
Sbjct: 245 TLT 247
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+TP T L P ++P TP + +PS+ PT ++ +P+ P
Sbjct: 94 LTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTP 140
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+TP T L P ++P TP + +PS+ PT ++ +P+ P
Sbjct: 86 LTPSNTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPTLTPSSTP 132
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+TP T L P ++P TP + +PS+ PT ++ +P+ P
Sbjct: 70 LTPCSTPTLTPCSTPTLTPSNTPTLTPSSTPTLTPSSTPTLTPSSTP 116
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPT 53
+TP T L P ++P TP + +PS+ PT
Sbjct: 150 LTPSSTPTLTPSSTPTLTPSSTPTLTPSSTPT 181
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+TP T L P ++P TP + +PS+ PT ++ +P+ P
Sbjct: 214 LTPSNTPTLIPSSTPTLTPSSTPTLTPSSRPTLTRSSTPTLTPSSTP 260
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 22 VTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
+TP T L P ++P TP + +PS+ P ++ +P+ P
Sbjct: 158 LTPSSTPTLTPSSTPTLTPSSTPTLTPSSRPILTRSSTPTLTPSSTP 204
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 34 NSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLSLDVP 79
+SP TP P+A SPSA P + Q+ SP P S+ SL P
Sbjct: 292 SSPLATPSPSAPPSPSAPP----SLQTLPSPPATPPSQATTSLGSP 333
>gi|110618250 mucin and cadherin-like isoform 3 [Homo sapiens]
Length = 651
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 24 PIPTFQLRPQNSPQTT-PRPAASESPSAAPTWPWAAQSHCSPT 65
P PT +P +P P P SP AP P AA++ SPT
Sbjct: 536 PSPTHDPKPAEAPMPAEPAPPGPASPGGAPEPPAAARAGGSPT 578
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 24 PIPTFQLRPQNSPQTT-PRPAASESPSAAPTWPWAAQSHCSPT 65
P PT +P +P P P SP AP P AA++ SPT
Sbjct: 730 PSPTHDPKPAEAPMPAEPAPPGPASPGGAPEPPAAARAGGSPT 772
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 23 TPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLSLDVP 79
TP+P P + P TP P A SPSA P + Q+ SP P S+ S+ P
Sbjct: 325 TPLPA--TLPPSPPLATPLPLAPPSPSAPP----SLQTLPSPPATPPSQAPPSMTTP 375
>gi|239746599 PREDICTED: hypothetical protein XP_002343795 [Homo
sapiens]
Length = 443
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 35 SPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
S + PRP+A + P+ P +AQ H P HP
Sbjct: 15 STRAPPRPSAPQQGRRQPSMPGSAQCHHRPDPHP 48
>gi|4503041 corticotropin releasing hormone precursor [Homo sapiens]
Length = 196
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 74 LSLDVPIGLLQILLEQARARAAREQATTNARILARVG 110
+SLD+ LL+ +LE ARA +QA +N +++ +G
Sbjct: 159 ISLDLTFHLLREVLEMARAEQLAQQAHSNRKLMEIIG 195
>gi|122056614 LIM domain binding 3 isoform 2 [Homo sapiens]
Length = 617
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 21 PVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTW 54
P TP P P +P TP P + +PS AP +
Sbjct: 318 PYTPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAY 351
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 23 TPIPTFQLRPQNSPQTTPRPAASESPSAAPTW-PWAAQSHCSPTRHPGSR 71
TP P P P TP PA + +PS AP + P + ++ P SR
Sbjct: 328 TPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASR 377
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 32 PQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
P +P TP PA + +PS PT+ + +P+ P
Sbjct: 321 PSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAP 357
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 21 PVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTW 54
P TP P P +P TP P + +PS AP +
Sbjct: 428 PYTPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAY 461
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 23 TPIPTFQLRPQNSPQTTPRPAASESPSAAPTW-PWAAQSHCSPTRHPGSR 71
TP P P P TP PA + +PS AP + P + ++ P SR
Sbjct: 438 TPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASR 487
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 32 PQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHP 68
P +P TP PA + +PS PT+ + +P+ P
Sbjct: 431 PSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAP 467
>gi|239757739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 40 PRPAASESPSA-APTWPWAAQSHCSPTRHPGSRI 72
PRP P AP WPW A CS PGSR+
Sbjct: 104 PRPRPGPFPRGPAPPWPWTAWPLCS--SFPGSRM 135
>gi|239752232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 40 PRPAASESPSA-APTWPWAAQSHCSPTRHPGSRI 72
PRP P AP WPW A CS PGSR+
Sbjct: 104 PRPRPGPFPRGPAPPWPWTAWPLCS--SFPGSRM 135
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 25 IPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLSLDVPIGLLQ 84
+PT ++ + T +P + AAQ SPT H G I L + + L
Sbjct: 119 LPTTEVTNTQASSVTAQPKKANKMKRVTAK--AAQGSQSPTGHEGGTIQLKSPLQVLKLP 176
Query: 85 ILLEQARARAAREQATTNARI 105
++ + A A E A++ A I
Sbjct: 177 VISQNIHAPIANESASSQALI 197
>gi|29540551 trophinin isoform 2 [Homo sapiens]
Length = 706
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 25 IPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLSLDVPIGLLQ 84
+PT ++ + T +P + AAQ SPT H G I L + + L
Sbjct: 119 LPTTEVTNTQASSVTAQPKKANKMKRVTAK--AAQGSQSPTGHEGGTIQLKSPLQVLKLP 176
Query: 85 ILLEQARARAAREQATTNARI 105
++ + A A E A++ A I
Sbjct: 177 VISQNIHAPIANESASSQALI 197
>gi|29540541 trophinin isoform 2 [Homo sapiens]
Length = 706
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 25 IPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLSLDVPIGLLQ 84
+PT ++ + T +P + AAQ SPT H G I L + + L
Sbjct: 119 LPTTEVTNTQASSVTAQPKKANKMKRVTAK--AAQGSQSPTGHEGGTIQLKSPLQVLKLP 176
Query: 85 ILLEQARARAAREQATTNARI 105
++ + A A E A++ A I
Sbjct: 177 VISQNIHAPIANESASSQALI 197
>gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens]
Length = 631
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 7 LLLMVLMLGRVLVVPVTPIPTFQLRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTR 66
L L+ ++ +L +P PI R Q S + PA S + + AP C PT
Sbjct: 266 LSLVTSLVSHLLSLPDHPIAQLLRRLQCSVYSALYPAVSRAAAPAP-------GCCPPTP 318
Query: 67 HPGSR 71
+PGSR
Sbjct: 319 NPGSR 323
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 PIPTFQLRPQNSPQTTPRPAASESP--SAAPTWPWAAQSHCSP 64
P+P+ +RP +P TP P +++S A P P + P
Sbjct: 1060 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQP 1102
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 PIPTFQLRPQNSPQTTPRPAASESP--SAAPTWPWAAQSHCSP 64
P+P+ +RP +P TP P +++S A P P + P
Sbjct: 1099 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQP 1141
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 PIPTFQLRPQNSPQTTPRPAASESP--SAAPTWPWAAQSHCSP 64
P+P+ +RP +P TP P +++S A P P + P
Sbjct: 1099 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQP 1141
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 30 LRPQNSPQTTPRPAASESPSAAPTWPWAAQSHCSPTRHPGSRIVLSLDVPIGLLQILLEQ 89
L + + +++ P + PSA PT A+ + S T H S +V + L++ +
Sbjct: 2273 LETEAATESSRPPVNAPDPSAGPTDTKEARGNSSETSHSVPEAKGSKEVEVTLVRKDKGR 2332
Query: 90 ARARAAREQATTNARILARV 109
+ +R + TN +++A V
Sbjct: 2333 QKTTRSRRKRNTNKKVVAPV 2352
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 29.6 bits (65), Expect = 0.54
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 PIPTFQLRPQNSPQTTPRPAASESP--SAAPTWPWAAQSHCSP 64
P+P+ +RP +P TP P +++S A P P + P
Sbjct: 1055 PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQP 1097
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,509,898
Number of Sequences: 37866
Number of extensions: 238548
Number of successful extensions: 2944
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 2243
Number of HSP's gapped (non-prelim): 764
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.