Guide to the Human Genome
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Name: C9orf128 Sequence: fasta or formatted (402aa) NCBI GI: 242117996
Description:

hypothetical protein LOC392307

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         24           2
 C cysteine            4.7         19           3
 D aspartate           4.5         18           1
 E glutamate          11.4         46           3
 F phenylalanine       3.7         15           2
 G glycine             4.2         17           2
 H histidine           6.0         24           2
 I isoleucine          3.5         14           2
 K lysine              3.5         14           1
 L leucine             6.2         25           2
 M methionine          1.0          4           1
 N asparagine          2.0          8           2
 P proline             8.5         34           2
 Q glutamine           4.2         17           1
 R arginine            6.2         25           2
 S serine             10.7         43           3
 T threonine           6.5         26           2
 V valine              4.2         17           2
 W tryptophan          2.0          8           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC392307 
C7orf46               0.060   hypothetical protein LOC340277 isoform 2 
C7orf46               0.060   hypothetical protein LOC340277 isoform 1 
C7orf46               0.030   hypothetical protein LOC340277 isoform 3 
MLL2                  0.024   myeloid/lymphoid or mixed-lineage leukemia 2 
RGS3                  0.024   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.024   regulator of G-protein signalling 3 isoform 2 
RGS3                  0.024   regulator of G-protein signalling 3 isoform 1 
MAGEC3                0.024   melanoma antigen family C, 3 isoform 2 
DCAF6                 0.023   IQ motif and WD repeats 1 isoform b 
VCX3B                 0.023   variable charge, X-linked 3B 
F5                    0.022   coagulation factor V precursor 
DCAF6                 0.019   IQ motif and WD repeats 1 isoform a 
FSCB                  0.019   fibrous sheath CABYR binding protein 
AFF1                  0.018   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
MUC17                 0.018   mucin 17 
VCX                   0.018   variable charge, X chromosome 
LOC100130716          0.018   PREDICTED: similar to mucin 11 
LOC100130716          0.018   PREDICTED: similar to Mucin-12 
C10orf12              0.018   hypothetical protein LOC26148 
C1orf9                0.018   chromosome 1 open reading frame 9 protein isoform 2...
C1orf9                0.018   chromosome 1 open reading frame 9 protein isoform 1 [...
RREB1                 0.017   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.017   ras responsive element binding protein 1 isoform 1 [...
NCAN                  0.017   chondroitin sulfate proteoglycan 3 
PCDH15                0.017   protocadherin 15 isoform CD2-1 precursor 
ZAN                   0.017   zonadhesin isoform 3 
ZAN                   0.017   zonadhesin isoform 6 
SPATA3                0.017   testis and spermatogenesis cell apoptosis related pr...
MUC12                 0.017   PREDICTED: mucin 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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