Guide to the Human Genome
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Name: LOC100128719 Sequence: fasta or formatted (306aa) NCBI GI: 239751395
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Other entries for this name:
alt mRNA {306aa} PREDICTED: hypothetical protein, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine           0.3          1           1
 I isoleucine          2.6          8           1
 K lysine              0.0          0           0
 L leucine            12.7         39           1
 M methionine          0.0          0           0
 N asparagine          2.9          9           1
 P proline            23.5         72           2
 Q glutamine           1.0          3           1
 R arginine            3.6         11           1
 S serine             21.2         65           2
 T threonine          31.4         96           1
 V valine              0.3          1           1
 W tryptophan          0.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100128719          1.000   PREDICTED: hypothetical protein, partial 
LOC100134147          0.634   PREDICTED: hypothetical protein 
MUC2                  0.336   mucin 2 precursor 
LOC100294420          0.303   PREDICTED: similar to mucin 2 
LOC284297             0.223   hypothetical protein LOC284297 
MUC5AC                0.194   mucin 5AC 
MUC5B                 0.194   mucin 5, subtype B, tracheobronchial 
MUC3A                 0.193   PREDICTED: mucin 3A, cell surface associated, parti...
PRG4                  0.186   proteoglycan 4 isoform D 
PRG4                  0.186   proteoglycan 4 isoform C 
PRG4                  0.186   proteoglycan 4 isoform B 
PRG4                  0.186   proteoglycan 4 isoform A 
SRCAP                 0.169   Snf2-related CBP activator protein 
POLR2A                0.160   DNA-directed RNA polymerase II A 
LOC100133756          0.158   PREDICTED: hypothetical protein, partial 
LOC100133408          0.153   PREDICTED: similar to mucin 
MUC3B                 0.150   PREDICTED: mucin 3B, cell surface associated, parti...
MUC17                 0.148   mucin 17 
MUC6                  0.147   mucin 6, gastric 
MUC3A                 0.145   PREDICTED: mucin 3A, intestinal 
ZAN                   0.136   zonadhesin isoform 3 
ZAN                   0.136   zonadhesin isoform 6 
LOC100134138          0.136   PREDICTED: similar to mucin, partial 
BCORL1                0.131   BCL6 co-repressor-like 1 
MUC7                  0.129   mucin 7, secreted precursor 
LOC100131514          0.129   PREDICTED: similar to hCG1747327, partial 
MUC7                  0.129   mucin 7, secreted precursor 
MUC7                  0.129   mucin 7, secreted precursor 
LOC100133761          0.128   PREDICTED: similar to Mucin-6, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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