Guide to the Human Genome
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Name: TRO Sequence: fasta or formatted (706aa) NCBI GI: 29540541
Description:

trophinin isoform 2

Referenced in:

Melanoma Antigen Family

Other entries for this name:
alt mRNA [706aa] trophinin isoform 2
alt prot [1431aa] trophinin isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         89           3
 C cysteine            0.6          4           1
 D aspartate           3.1         22           2
 E glutamate           5.8         41           2
 F phenylalanine       1.4         10           2
 G glycine             4.1         29           2
 H histidine           1.7         12           1
 I isoleucine          6.1         43           2
 K lysine              9.1         64           2
 L leucine             7.5         53           2
 M methionine          1.6         11           1
 N asparagine          3.8         27           1
 P proline             6.7         47           3
 Q glutamine           5.2         37           1
 R arginine            5.7         40           2
 S serine              7.9         56           2
 T threonine           7.8         55           2
 V valine              6.2         44           2
 W tryptophan          0.8          6           1
 Y tyrosine            2.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trophinin isoform 2 
TRO                   1.000   trophinin isoform 2 
TRO                   0.929   trophinin isoform 5 
MAGED2                0.275   melanoma antigen family D, 2 
MAGED2                0.275   melanoma antigen family D, 2 
MAGED2                0.275   melanoma antigen family D, 2 
MAGED4B               0.251   melanoma antigen family D, 4B isoform 2 
MAGED4B               0.251   melanoma antigen family D, 4B isoform 1 
MAGED4B               0.251   melanoma antigen family D, 4B isoform 1 
MAGED4                0.251   melanoma antigen family D, 4 
MAGED1                0.236   melanoma antigen family D, 1 isoform a 
MAGED1                0.236   melanoma antigen family D, 1 isoform b 
MAGED1                0.236   melanoma antigen family D, 1 isoform b 
NDNL2                 0.133   necdin-like 2 
MAGEF1                0.127   melanoma antigen family F, 1 
MAGEE1                0.126   melanoma antigen family E, 1 
MAGEL2                0.125   MAGE-like protein 2 
NDN                   0.117   necdin 
MAGEB4                0.117   melanoma antigen family B, 4 
MAGEB10               0.117   melanoma antigen family B, 10 
MAGEB3                0.114   melanoma antigen family B, 3 
MAGEB16               0.112   melanoma antigen family B, 16 
MAGEB17               0.109   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.109   PREDICTED: melanoma antigen family B, 17 
MAGEB17               0.109   PREDICTED: melanoma antigen family B, 17 
MAGEB18               0.107   melanoma antigen family B, 18 
MAGEA10               0.106   melanoma antigen family A, 10 
MAGEA10               0.106   melanoma antigen family A, 10 
MAGEB1                0.105   melanoma antigen family B, 1 
MAGEB1                0.105   melanoma antigen family B, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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