Guide to the Human Genome
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Name: LOC100294485 Sequence: fasta or formatted (160aa) NCBI GI: 239752232
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         16           2
 C cysteine            3.1          5           1
 D aspartate           0.6          1           1
 E glutamate           3.1          5           1
 F phenylalanine       5.6          9           1
 G glycine             5.6          9           2
 H histidine           2.5          4           1
 I isoleucine          1.2          2           1
 K lysine              0.6          1           1
 L leucine             8.1         13           3
 M methionine          1.2          2           1
 N asparagine          0.0          0           0
 P proline            16.2         26           2
 Q glutamine           5.0          8           1
 R arginine           10.0         16           1
 S serine              8.1         13           2
 T threonine           6.9         11           2
 V valine              7.5         12           1
 W tryptophan          3.1          5           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293421          1.000   PREDICTED: hypothetical protein 
C2orf24               0.035   hypothetical protein LOC27013 
KCNH3                 0.031   potassium voltage-gated channel, subfamily H (eag-re...
SETBP1                0.022   SET binding protein 1 isoform a 
HEYL                  0.022   hairy/enhancer-of-split related with YRPW motif-like ...
CLCN2                 0.022   chloride channel 2 
ZFHX4                 0.022   zinc finger homeodomain 4 
PDCD7                 0.022   programmed cell death 7 
FLJ20021              0.022   PREDICTED: hypothetical protein 
LOC731282             0.022   PREDICTED: hypothetical protein 
LOC401934             0.022   PREDICTED: hypothetical protein 
FLJ20021              0.022   PREDICTED: hypothetical protein 
LOC401934             0.022   PREDICTED: hypothetical protein 
FLJ20021              0.022   PREDICTED: hypothetical protein 
LOC401934             0.022   PREDICTED: hypothetical protein 
B4GALNT4              0.022   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
ZNF828                0.019   zinc finger protein 828 
YLPM1                 0.019   YLP motif containing 1 
CDKN1C                0.019   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.019   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.019   cyclin-dependent kinase inhibitor 1C isoform a 
TNRC18                0.019   trinucleotide repeat containing 18 
SEC31B                0.019   SEC31 homolog B 
EPS8L1                0.019   epidermal growth factor receptor pathway substrate ...
EPS8L1                0.019   epidermal growth factor receptor pathway substrate ...
LOC100130431          0.016   PREDICTED: hypothetical protein 
LOC645781             0.016   PREDICTED: similar to mCG141871 
LOC100130431          0.016   PREDICTED: hypothetical protein 
LOC645781             0.016   PREDICTED: similar to mCG141871 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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