Guide to the Human Genome
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Name: NCAPD3 Sequence: fasta or formatted (1498aa) NCBI GI: 45356151
Description:

non-SMC condensin II complex, subunit D3

Referenced in:

Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         98           2
 C cysteine            2.5         38           1
 D aspartate           4.2         63           2
 E glutamate           7.5        112           2
 F phenylalanine       4.0         60           2
 G glycine             3.7         55           2
 H histidine           3.0         45           2
 I isoleucine          6.0         90           3
 K lysine              6.5         97           2
 L leucine            11.6        174           3
 M methionine          2.0         30           1
 N asparagine          3.6         54           2
 P proline             5.1         77           3
 Q glutamine           5.1         76           2
 R arginine            5.2         78           3
 S serine              9.3        140           2
 T threonine           4.3         64           2
 V valine              6.9        104           2
 W tryptophan          1.0         15           1
 Y tyrosine            1.9         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   non-SMC condensin II complex, subunit D3 
NCAPD2                0.011   non-SMC condensin I complex, subunit D2 
PNN                   0.007   pinin, desmosome associated protein 
SMARCA2               0.005   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.005   SWI/SNF-related matrix-associated actin-dependent re...
AHCYL2                0.004   S-adenosylhomocysteine hydrolase-like 2 isoform a [H...
HMMR                  0.004   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.004   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.004   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.004   hyaluronan-mediated motility receptor isoform b [Ho...
AHCYL2                0.004   S-adenosylhomocysteine hydrolase-like 2 isoform b [...
SKIL                  0.004   SKI-like isoform 3 
SKIL                  0.004   SKI-like isoform 2 
SKIL                  0.004   SKI-like isoform 1 
MICAL3                0.004   microtubule associated monoxygenase, calponin and L...
AP1B1                 0.004   adaptor-related protein complex 1 beta 1 subunit iso...
AP1B1                 0.004   adaptor-related protein complex 1 beta 1 subunit iso...
RALGPS1               0.003   Ral GEF with PH domain and SH3 binding motif 1 
MAPK7                 0.003   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.003   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.003   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.003   mitogen-activated protein kinase 7 isoform 2 
CUL4B                 0.003   cullin 4B isoform 2 
CUL4B                 0.003   cullin 4B isoform 1 
LOC731275             0.003   PREDICTED: similar to Putative uncharacterized prot...
CECR2                 0.003   cat eye syndrome chromosome region, candidate 2 [Ho...
AP2B1                 0.003   adaptor-related protein complex 2, beta 1 subunit is...
AP2B1                 0.003   adaptor-related protein complex 2, beta 1 subunit iso...
KAT2A                 0.003   general control of amino acid synthesis 5-like 2 [H...
CMPK1                 0.003   UMP-CMP kinase 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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