Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: UCN3 Sequence: fasta or formatted (161aa) NCBI GI: 45238845
Description:

urocortin 3 preproprotein

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         17           3
 C cysteine            0.6          1           1
 D aspartate           2.5          4           1
 E glutamate           5.0          8           4
 F phenylalanine       4.3          7           1
 G glycine             7.5         12           2
 H histidine           3.1          5           1
 I isoleucine          3.1          5           1
 K lysine              9.3         15           2
 L leucine            13.0         21           8
 M methionine          2.5          4           1
 N asparagine          3.7          6           1
 P proline             5.6          9           1
 Q glutamine           3.7          6           1
 R arginine            8.1         13           1
 S serine              7.5         12           2
 T threonine           5.0          8           1
 V valine              1.9          3           1
 W tryptophan          0.6          1           1
 Y tyrosine            2.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   urocortin 3 preproprotein 
UCN2                  0.047   urocortin 2 preproprotein 
BAZ1B                 0.023   bromodomain adjacent to zinc finger domain, 1B [Homo...
AUTS2                 0.017   autism susceptibility candidate 2 isoform 3 
AUTS2                 0.017   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.017   autism susceptibility candidate 2 isoform 1 
CHGB                  0.013   chromogranin B precursor 
UCN                   0.013   urocortin preproprotein 
HCLS1                 0.010   hematopoietic cell-specific Lyn substrate 1 
CACNA1A               0.010   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.010   calcium channel, alpha 1A subunit isoform 3 
SEC16A                0.010   SEC16 homolog A 
FYCO1                 0.010   FYVE and coiled-coil domain containing 1 
CRH                   0.010   corticotropin releasing hormone precursor 
FN1                   0.010   fibronectin 1 isoform 3 preproprotein 
FN1                   0.010   fibronectin 1 isoform 1 preproprotein 
FN1                   0.010   fibronectin 1 isoform 4 preproprotein 
FN1                   0.010   fibronectin 1 isoform 5 preproprotein 
FN1                   0.010   fibronectin 1 isoform 2 preproprotein 
FN1                   0.010   fibronectin 1 isoform 6 preproprotein 
LOC100292088          0.010   PREDICTED: hypothetical protein XP_002346321 
ZSWIM6                0.010   zinc finger, SWIM-type containing 6 
FLG                   0.007   filaggrin 
TOP2B                 0.007   DNA topoisomerase II, beta isozyme 
SYNE1                 0.007   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.007   spectrin repeat containing, nuclear envelope 1 isof...
SNIP1                 0.007   Smad nuclear interacting protein 
SCXB                  0.007   scleraxis homolog B 
LOC100292648          0.007   PREDICTED: similar to hCG2036828 
DISP1                 0.007   dispatched A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press