Guide to the Human Genome
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Name: UCN2 Sequence: fasta or formatted (112aa) NCBI GI: 15082240
Description:

urocortin 2 preproprotein

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         14           2
 C cysteine            2.7          3           1
 D aspartate           0.9          1           1
 E glutamate           2.7          3           1
 F phenylalanine       0.9          1           1
 G glycine             3.6          4           1
 H histidine           2.7          3           1
 I isoleucine          4.5          5           1
 K lysine              0.0          0           0
 L leucine            13.4         15           4
 M methionine          2.7          3           1
 N asparagine          1.8          2           1
 P proline            11.6         13           1
 Q glutamine           6.2          7           1
 R arginine            9.8         11           1
 S serine              7.1          8           1
 T threonine           8.0          9           2
 V valine              7.1          8           2
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   urocortin 2 preproprotein 
UCN3                  0.070   urocortin 3 preproprotein 
EIF3F                 0.050   eukaryotic translation initiation factor 3, subunit 5...
PHLDA1                0.045   pleckstrin homology-like domain, family A, member 1 ...
KAT2A                 0.040   general control of amino acid synthesis 5-like 2 [H...
LOC100128719          0.035   PREDICTED: hypothetical protein, partial 
LOC100128719          0.035   PREDICTED: hypothetical protein, partial 
NCAPD3                0.035   non-SMC condensin II complex, subunit D3 
C9orf128              0.030   hypothetical protein LOC392307 
UCN                   0.030   urocortin preproprotein 
LOC100134147          0.030   PREDICTED: hypothetical protein 
FLJ22184              0.030   PREDICTED: hypothetical protein LOC80164 
MUPCDH                0.030   mucin and cadherin-like isoform 3 
MUPCDH                0.030   mucin and cadherin-like isoform 1 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
LOC100288336          0.025   PREDICTED: hypothetical protein XP_002343795 
CRH                   0.025   corticotropin releasing hormone precursor 
LDB3                  0.025   LIM domain binding 3 isoform 2 
LDB3                  0.025   LIM domain binding 3 isoform 1 
LOC100293421          0.025   PREDICTED: hypothetical protein 
LOC100294485          0.025   PREDICTED: hypothetical protein 
TRO                   0.025   trophinin isoform 5 
TRO                   0.025   trophinin isoform 2 
TRO                   0.025   trophinin isoform 2 
C16orf7               0.025   chromosome 16 open reading frame 7 
SYNJ1                 0.025   synaptojanin 1 isoform c 
SYNJ1                 0.025   synaptojanin 1 isoform a 
SYNJ1                 0.025   synaptojanin 1 isoform b 
SPEN                  0.025   spen homolog, transcriptional regulator 
SYNJ1                 0.025   synaptojanin 1 isoform d 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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