Guide to the Human Genome
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Name: LOC100134147 Sequence: fasta or formatted (280aa) NCBI GI: 169211436
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          3           2
 C cysteine            0.7          2           1
 D aspartate           0.0          0           0
 E glutamate           2.5          7           1
 F phenylalanine       0.0          0           0
 G glycine             3.2          9           2
 H histidine           0.7          2           1
 I isoleucine          1.1          3           1
 K lysine              0.4          1           1
 L leucine            10.7         30           1
 M methionine          2.1          6           1
 N asparagine          1.4          4           1
 P proline            20.7         58           2
 Q glutamine           0.7          2           1
 R arginine            3.2          9           1
 S serine             19.6         55           2
 T threonine          29.3         82           1
 V valine              1.4          4           1
 W tryptophan          0.7          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128719          0.694   PREDICTED: hypothetical protein, partial 
LOC100128719          0.694   PREDICTED: hypothetical protein, partial 
MUC2                  0.282   mucin 2 precursor 
LOC100294420          0.275   PREDICTED: similar to mucin 2 
LOC284297             0.192   hypothetical protein LOC284297 
MUC3A                 0.179   PREDICTED: mucin 3A, cell surface associated, parti...
MUC5AC                0.179   mucin 5AC 
MUC5B                 0.179   mucin 5, subtype B, tracheobronchial 
SRCAP                 0.161   Snf2-related CBP activator protein 
POLR2A                0.157   DNA-directed RNA polymerase II A 
PRG4                  0.148   proteoglycan 4 isoform D 
PRG4                  0.148   proteoglycan 4 isoform C 
PRG4                  0.148   proteoglycan 4 isoform B 
PRG4                  0.148   proteoglycan 4 isoform A 
LOC100133408          0.144   PREDICTED: similar to mucin 
MUC17                 0.142   mucin 17 
BCORL1                0.142   BCL6 co-repressor-like 1 
LOC730474             0.138   PREDICTED: hypothetical protein, partial 
MUC3B                 0.138   PREDICTED: mucin 3B, cell surface associated, parti...
MUC3A                 0.138   PREDICTED: mucin 3A, intestinal 
LOC100133756          0.135   PREDICTED: hypothetical protein, partial 
LOC100132635          0.131   PREDICTED: similar to mucin 5, partial 
LOC100293557          0.127   PREDICTED: hypothetical protein 
MUC7                  0.127   mucin 7, secreted precursor 
MUC7                  0.127   mucin 7, secreted precursor 
MUC7                  0.127   mucin 7, secreted precursor 
LOC100131525          0.125   PREDICTED: hypothetical protein 
LOC100131514          0.124   PREDICTED: similar to hCG1747327, partial 
LOC732156             0.124   PREDICTED: similar to Mucin-3A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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