Guide to the Human Genome
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Name: UCN Sequence: fasta or formatted (124aa) NCBI GI: 4507803
Description:

urocortin preproprotein

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         15           2
 C cysteine            0.8          1           1
 D aspartate           3.2          4           1
 E glutamate           4.8          6           1
 F phenylalanine       2.4          3           1
 G glycine            10.5         13           3
 H histidine           0.8          1           1
 I isoleucine          2.4          3           2
 K lysine              0.8          1           1
 L leucine            17.7         22           5
 M methionine          0.8          1           1
 N asparagine          2.4          3           1
 P proline             6.5          8           1
 Q glutamine           6.5          8           1
 R arginine           14.5         18           2
 S serine              7.3          9           2
 T threonine           3.2          4           1
 V valine              2.4          3           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   urocortin preproprotein 
CRH                   0.124   corticotropin releasing hormone precursor 
RNF169                0.037   ring finger protein 169 
GLT25D1               0.032   glycosyltransferase 25 domain containing 1 
UCN2                  0.028   urocortin 2 preproprotein 
CELSR2                0.023   cadherin EGF LAG seven-pass G-type receptor 2 
DMRTA1                0.023   DMRT-like family A1 
LOC100290140          0.018   PREDICTED: hypothetical protein XP_002346786 
LOC100288414          0.018   PREDICTED: hypothetical protein XP_002342651 
PCNT                  0.018   pericentrin 
SOX18                 0.018   SRY-box 18 
SELO                  0.018   selenoprotein O 
ANKRD54               0.018   ankyrin repeat domain 54 
LOC728767             0.018   PREDICTED: hypothetical protein 
LOC728767             0.018   PREDICTED: hypothetical protein 
KIFC1                 0.018   kinesin family member C1 
UCN3                  0.018   urocortin 3 preproprotein 
KRBA1                 0.018   KRAB A domain containing 1 
PCDH7                 0.014   protocadherin 7 isoform b precursor 
PCDH7                 0.014   protocadherin 7 isoform c precursor 
PCDH7                 0.014   protocadherin 7 isoform a precursor 
APLP1                 0.014   amyloid precursor-like protein 1 isoform 2 precursor ...
APLP1                 0.014   amyloid precursor-like protein 1 isoform 1 precursor...
ZNF827                0.014   zinc finger protein 827 
LOC100292576          0.014   PREDICTED: hypothetical protein 
LOC100288860          0.014   PREDICTED: hypothetical protein 
LOC100288860          0.014   PREDICTED: hypothetical protein XP_002343712 
LOC389333             0.014   hypothetical protein LOC389333 
LOC730254             0.014   PREDICTED: hypothetical protein 
LOC100289917          0.014   PREDICTED: hypothetical protein XP_002347096 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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