Guide to the Human Genome
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Name: HEXDC Sequence: fasta or formatted (585aa) NCBI GI: 150456449
Description:

hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         57           2
 C cysteine            3.6         21           2
 D aspartate           2.7         16           2
 E glutamate           5.1         30           1
 F phenylalanine       2.4         14           1
 G glycine             8.4         49           2
 H histidine           3.6         21           2
 I isoleucine          2.1         12           2
 K lysine              2.7         16           1
 L leucine            13.2         77           3
 M methionine          2.1         12           1
 N asparagine          1.2          7           1
 P proline             9.1         53           2
 Q glutamine           3.8         22           2
 R arginine            6.7         39           2
 S serine              9.4         55           3
 T threonine           4.3         25           2
 V valine              5.5         32           2
 W tryptophan          2.7         16           1
 Y tyrosine            1.9         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hexosaminidase (glycosyl hydrolase family 20, catal... 
LOC100133915          0.014   PREDICTED: hypothetical protein 
KRTAP10-8             0.010   keratin associated protein 10-8 
C17orf65              0.010   hypothetical protein LOC339201 
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.009   retinoblastoma protein-binding zinc finger protein i...
LOC100292266          0.008   PREDICTED: hypothetical protein 
KRTAP10-2             0.007   keratin associated protein 10-2 
KRTAP10-7             0.007   keratin associated protein 10-7 
CRTC1                 0.007   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.007   mucoepidermoid carcinoma translocated 1 isoform 1 [...
ZNF828                0.007   zinc finger protein 828 
FAM53A                0.007   dorsal neural-tube nuclear protein 
HEXB                  0.007   hexosaminidase B preproprotein 
LOC729915             0.007   PREDICTED: similar to Putative POM121-like protein ...
KRTAP10-6             0.007   keratin associated protein 10-6 
C11orf24              0.007   hypothetical protein LOC53838 
KRTAP10-4             0.007   keratin associated protein 10-4 
LOC100290261          0.006   PREDICTED: hypothetical protein XP_002347648 
UBE4B                 0.006   ubiquitination factor E4B isoform 1 
KRTAP10-1             0.006   keratin associated protein 10-1 
C10orf95              0.006   hypothetical protein LOC79946 
SCN1B                 0.006   sodium channel, voltage-gated, type I, beta isoform ...
LOC146429             0.006   PREDICTED: hypothetical protein LOC146429 isoform 6...
UBAP2L                0.006   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.006   ubiquitin associated protein 2-like isoform b [Homo...
KRTAP10-3             0.006   keratin associated protein 10-3 
KRTAP10-12            0.006   keratin associated protein 10-12 
PPRC1                 0.006   peroxisome proliferator-activated receptor gamma, co...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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