Guide to the Human Genome
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Name: LOC729915 Sequence: fasta or formatted (896aa) NCBI GI: 239742514
Description:

PREDICTED: similar to Putative POM121-like protein 1-like

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2        109           6
 C cysteine            1.8         16           1
 D aspartate           4.7         42           2
 E glutamate           2.9         26           1
 F phenylalanine       2.0         18           2
 G glycine             6.2         56           2
 H histidine           2.7         24           1
 I isoleucine          1.5         13           1
 K lysine              3.2         29           2
 L leucine             7.8         70           2
 M methionine          1.2         11           2
 N asparagine          1.9         17           1
 P proline            10.6         95           3
 Q glutamine           4.6         41           2
 R arginine            9.2         82           3
 S serine             16.4        147           4
 T threonine           6.5         58           1
 V valine              3.7         33           1
 W tryptophan          0.3          3           1
 Y tyrosine            0.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative POM121-like protein ... 
LOC100133280          0.934   PREDICTED: similar to Putative POM121-like protein ...
LOC100294020          0.277   PREDICTED: similar to POM121-like 1, partial 
POM121C               0.078   POM121 membrane glycoprotein (rat)-like 
POM121                0.078   nuclear pore membrane protein 121 
LOC100292653          0.065   PREDICTED: similar to hCG1998564 
LOC100288540          0.050   PREDICTED: hypothetical protein XP_002342775 
POM121L2              0.047   POM121 membrane glycoprotein-like 2 
TRIOBP                0.030   TRIO and F-actin binding protein isoform 6 
SRRM2                 0.030   splicing coactivator subunit SRm300 
MUC12                 0.029   PREDICTED: mucin 12 
C15orf2               0.027   hypothetical protein LOC23742 
MUC12                 0.025   PREDICTED: mucin 12 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
LOC100133756          0.021   PREDICTED: hypothetical protein, partial 
LOC100133714          0.021   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.021   PREDICTED: mucin 12, cell surface associated 
MAP7D1                0.021   MAP7 domain containing 1 
MUC4                  0.021   mucin 4 isoform a 
MUC17                 0.021   mucin 17 
FNDC1                 0.020   fibronectin type III domain containing 1 
MUC6                  0.019   mucin 6, gastric 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
MBD6                  0.018   methyl-CpG binding domain protein 6 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
SCAF1                 0.015   SR-related CTD-associated factor 1 
MED1                  0.015   mediator complex subunit 1 
SAMD1                 0.015   sterile alpha motif domain containing 1 
NAV2                  0.015   neuron navigator 2 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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