Guide to the Human Genome
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Name: UBAP2L Sequence: fasta or formatted (1087aa) NCBI GI: 188497758
Description:

ubiquitin associated protein 2-like isoform a

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [983aa] ubiquitin associated protein 2-like isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         78           3
 C cysteine            0.2          2           1
 D aspartate           3.7         40           2
 E glutamate           3.7         40           2
 F phenylalanine       2.7         29           1
 G glycine             8.9         97           2
 H histidine           2.4         26           3
 I isoleucine          2.2         24           1
 K lysine              3.3         36           3
 L leucine             6.3         68           2
 M methionine          1.5         16           2
 N asparagine          5.1         55           2
 P proline             8.3         90           4
 Q glutamine           7.8         85           2
 R arginine            3.6         39           3
 S serine             15.9        173           4
 T threonine          10.1        110           4
 V valine              4.0         43           2
 W tryptophan          0.7          8           1
 Y tyrosine            2.6         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin associated protein 2-like isoform a [Homo... 
UBAP2L                0.886   ubiquitin associated protein 2-like isoform b [Homo...
UBAP2                 0.394   ubiquitin associated protein 2 
DSPP                  0.035   dentin sialophosphoprotein preproprotein 
MUC12                 0.034   PREDICTED: mucin 12 
MUC12                 0.034   PREDICTED: mucin 12, cell surface associated 
MUC12                 0.031   PREDICTED: mucin 12 
LOC100130716          0.031   PREDICTED: similar to mucin 11 
MUC21                 0.031   mucin 21 
LOC100133714          0.030   PREDICTED: similar to Mucin-12, partial 
LOC729792             0.030   PREDICTED: hypothetical protein 
LOC729792             0.030   PREDICTED: hypothetical protein 
LOC729792             0.030   PREDICTED: hypothetical protein 
LOC100294501          0.030   PREDICTED: hypothetical protein 
LOC100294249          0.030   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.030   PREDICTED: hypothetical protein 
LOC100294204          0.030   PREDICTED: hypothetical protein 
LOC100294136          0.030   PREDICTED: hypothetical protein 
LOC100294091          0.030   PREDICTED: hypothetical protein 
LOC730401             0.030   PREDICTED: hypothetical protein 
MUC5B                 0.029   mucin 5, subtype B, tracheobronchial 
MUC3A                 0.029   PREDICTED: mucin 3A, intestinal 
MUC17                 0.028   mucin 17 
LOC100294236          0.028   PREDICTED: similar to diffuse panbronchiolitis crit...
LOC100134138          0.026   PREDICTED: similar to mucin, partial 
MUC5AC                0.026   mucin 5AC 
LOC100130716          0.026   PREDICTED: similar to Mucin-12 
MUC3A                 0.025   PREDICTED: mucin 3A, cell surface associated, parti...
MUC6                  0.025   mucin 6, gastric 
MUC12                 0.024   PREDICTED: mucin 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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