Guide to the Human Genome
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Name: LOC100292266 Sequence: fasta or formatted (319aa) NCBI GI: 239755581
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         41           2
 C cysteine            4.1         13           2
 D aspartate           2.2          7           1
 E glutamate           3.8         12           1
 F phenylalanine       1.6          5           1
 G glycine             9.7         31           2
 H histidine           3.4         11           2
 I isoleucine          0.6          2           1
 K lysine              0.9          3           1
 L leucine            10.7         34           2
 M methionine          1.3          4           1
 N asparagine          0.6          2           1
 P proline            11.0         35           4
 Q glutamine           9.7         31           2
 R arginine            7.2         23           2
 S serine              8.8         28           2
 T threonine           5.0         16           2
 V valine              4.1         13           3
 W tryptophan          1.9          6           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129463          0.020   PREDICTED: hypothetical protein 
LOC100129463          0.020   PREDICTED: hypothetical protein 
LOC100129463          0.020   PREDICTED: hypothetical protein 
LOC100129463          0.020   PREDICTED: hypothetical protein 
ATN1                  0.019   atrophin-1 
ATN1                  0.019   atrophin-1 
LTBP2                 0.017   latent transforming growth factor beta binding protei...
MCTP1                 0.017   multiple C2 domains, transmembrane 1 isoform L [Hom...
BCL9L                 0.017   B-cell CLL/lymphoma 9-like 
CABLES2               0.016   Cdk5 and Abl enzyme substrate 2 
LOC401180             0.016   PREDICTED: similar to hCG1745223 
LOC401180             0.016   PREDICTED: similar to hCG1745223 
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100129630          0.014   PREDICTED: hypothetical protein 
C6orf132              0.014   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100129630          0.014   PREDICTED: hypothetical protein 
C6orf132              0.014   PREDICTED: hypothetical protein LOC647024 
HEXDC                 0.014   hexosaminidase (glycosyl hydrolase family 20, catal...
LOC100129630          0.013   PREDICTED: hypothetical protein 
LOC100289242          0.013   PREDICTED: hypothetical protein XP_002342243 
SPRED3                0.013   sprouty-related, EVH1 domain containing 3 isoform a...
HOXC13                0.013   homeobox C13 
AP1G2                 0.013   adaptor-related protein complex 1, gamma 2 subunit [H...
ARHGEF17              0.013   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
ZNF646                0.013   zinc finger protein 646 
MAPKBP1               0.013   mitogen-activated protein kinase binding protein 1 ...
MAPKBP1               0.013   mitogen-activated protein kinase binding protein 1 ...
SH3RF3                0.013   SH3 domain containing ring finger 3 
FAM160A2              0.011   hypothetical protein LOC84067 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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