Guide to the Human Genome
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Name: UBAP2L Sequence: fasta or formatted (983aa) NCBI GI: 188497756
Description:

ubiquitin associated protein 2-like isoform b

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [1087aa] ubiquitin associated protein 2-like isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         69           2
 C cysteine            0.2          2           1
 D aspartate           3.9         38           2
 E glutamate           4.1         40           2
 F phenylalanine       2.6         26           1
 G glycine             8.7         86           2
 H histidine           2.0         20           2
 I isoleucine          1.9         19           1
 K lysine              3.5         34           3
 L leucine             6.4         63           2
 M methionine          1.5         15           2
 N asparagine          5.0         49           2
 P proline             8.2         81           4
 Q glutamine           7.3         72           2
 R arginine            4.0         39           3
 S serine             15.8        155           4
 T threonine          10.4        102           4
 V valine              4.0         39           2
 W tryptophan          0.8          8           1
 Y tyrosine            2.6         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin associated protein 2-like isoform b [Homo... 
UBAP2L                0.981   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2                 0.372   ubiquitin associated protein 2 
DSPP                  0.039   dentin sialophosphoprotein preproprotein 
MUC12                 0.036   PREDICTED: mucin 12 
MUC12                 0.036   PREDICTED: mucin 12 
LOC100130716          0.034   PREDICTED: similar to mucin 11 
MUC21                 0.034   mucin 21 
MUC17                 0.034   mucin 17 
MUC12                 0.033   PREDICTED: mucin 12, cell surface associated 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC100294501          0.033   PREDICTED: hypothetical protein 
LOC100294249          0.033   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.033   PREDICTED: hypothetical protein 
LOC100294204          0.033   PREDICTED: hypothetical protein 
LOC100294136          0.033   PREDICTED: hypothetical protein 
LOC100294091          0.033   PREDICTED: hypothetical protein 
LOC730401             0.033   PREDICTED: hypothetical protein 
LOC100133714          0.032   PREDICTED: similar to Mucin-12, partial 
MUC5B                 0.032   mucin 5, subtype B, tracheobronchial 
LOC100294236          0.030   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC3A                 0.030   PREDICTED: mucin 3A, intestinal 
MUC5AC                0.028   mucin 5AC 
MUC3A                 0.028   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100130716          0.028   PREDICTED: similar to Mucin-12 
LOC100134138          0.028   PREDICTED: similar to mucin, partial 
MUC6                  0.027   mucin 6, gastric 
LOC100294420          0.027   PREDICTED: similar to mucin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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