Guide to the Human Genome
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Name: LOC146429 Sequence: fasta or formatted (560aa) NCBI GI: 239751156
Description:

PREDICTED: hypothetical protein LOC146429 isoform 6

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [558aa] PREDICTED: hypothetical protein LOC146429 isoform 1
alt prot [495aa] PREDICTED: hypothetical protein LOC146429
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         70           3
 C cysteine            2.1         12           2
 D aspartate           2.1         12           1
 E glutamate           3.0         17           2
 F phenylalanine       3.9         22           2
 G glycine            10.4         58           3
 H histidine           1.6          9           1
 I isoleucine          1.2          7           1
 K lysine              0.4          2           1
 L leucine            21.2        119           4
 M methionine          0.9          5           1
 N asparagine          0.7          4           1
 P proline             7.7         43           2
 Q glutamine           3.0         17           2
 R arginine            7.7         43           2
 S serine              7.7         43           2
 T threonine           4.3         24           2
 V valine              6.1         34           2
 W tryptophan          2.1         12           1
 Y tyrosine            1.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC146429 isoform 6... 
LOC146429             0.982   PREDICTED: hypothetical protein LOC146429 isoform 1...
LOC146429             0.777   PREDICTED: hypothetical protein LOC146429 
SLC22A17              0.235   solute carrier family 22, member 17 isoform b 
SLC22A17              0.222   solute carrier family 22, member 17 isoform a 
SLC22A23              0.206   solute carrier family 22, member 23 isoform a [Homo...
SLC22A23              0.165   solute carrier family 22, member 23 isoform b 
SLC22A2               0.110   solute carrier family 22 member 2 
SLC22A5               0.110   solute carrier family 22 member 5 
SLC22A3               0.110   solute carrier family 22 member 3 
SLC22A7               0.100   solute carrier family 22 member 7 isoform b 
SLC22A7               0.100   solute carrier family 22 member 7 isoform a 
SLC22A8               0.099   solute carrier family 22 member 8 
SLC22A12              0.098   urate anion exchanger 1 isoform a 
SLC22A1               0.096   solute carrier family 22 member 1 isoform a 
SLC22A4               0.091   solute carrier family 22 member 4 
SLC22A6               0.088   solute carrier family 22 member 6 isoform b 
SLC22A6               0.087   solute carrier family 22 member 6 isoform a 
SLC22A13              0.086   solute carrier family 22 (organic anion transporter...
SLC22A20              0.077   solute carrier family 22, member 20 
SLC22A1               0.076   solute carrier family 22 member 1 isoform b 
SLC22A16              0.073   solute carrier family 22, member 16 
SLC22A6               0.069   solute carrier family 22 member 6 isoform d 
SLC22A6               0.069   solute carrier family 22 member 6 isoform c 
SLC22A11              0.068   solute carrier family 22 member 11 
SLC22A15              0.059   solute carrier family 22, member 15 
SLC22A10              0.059   solute carrier family 22, member 10 
SLC22A24              0.057   solute carrier family 22, member 24 
SLC22A14              0.057   organic cation transporter like 4 
SLC22A12              0.056   urate anion exchanger 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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