Guide to the Human Genome
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Name: HEXB Sequence: fasta or formatted (556aa) NCBI GI: 4504373
Description:

hexosaminidase B preproprotein

Referenced in:

Protein Glycosylation
Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         38           2
 C cysteine            1.4          8           1
 D aspartate           5.2         29           2
 E glutamate           5.6         31           2
 F phenylalanine       5.2         29           2
 G glycine             5.8         32           2
 H histidine           2.5         14           2
 I isoleucine          5.2         29           2
 K lysine              5.2         29           2
 L leucine            11.2         62           3
 M methionine          1.8         10           1
 N asparagine          3.2         18           1
 P proline             6.3         35           2
 Q glutamine           4.1         23           2
 R arginine            4.7         26           2
 S serine              7.2         40           2
 T threonine           5.8         32           2
 V valine              6.1         34           2
 W tryptophan          2.3         13           1
 Y tyrosine            4.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hexosaminidase B preproprotein 
HEXA                  0.524   hexosaminidase A preproprotein 
HEXDC                 0.007   hexosaminidase (glycosyl hydrolase family 20, catal...
BAIAP2L2              0.007   BAI1-associated protein 2-like 2 
ZC3H7B                0.006   zinc finger CCCH-type containing 7B 
SLC2A1                0.006   solute carrier family 2 (facilitated glucose transp...
SLC2A7                0.006   intestinal facilitative glucose transporter 7 [Homo...
RYK                   0.005   RYK receptor-like tyrosine kinase isoform 2 
RYK                   0.005   RYK receptor-like tyrosine kinase isoform 1 
SNX27                 0.004   sorting nexin family member 27 
LOC100293440          0.004   PREDICTED: similar to Ig lambda chain 
YLPM1                 0.004   YLP motif containing 1 
LOC100292392          0.004   PREDICTED: hypothetical protein 
LOC100287377          0.004   PREDICTED: hypothetical protein 
LOC100287377          0.004   PREDICTED: hypothetical protein XP_002342514 
OR6A2                 0.004   olfactory receptor, family 6, subfamily A, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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