Guide to the Human Genome
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Name: C20orf12 Sequence: fasta or formatted (752aa) NCBI GI: 150378537
Description:

hypothetical protein LOC55184

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         52           2
 C cysteine            4.5         34           2
 D aspartate           4.5         34           2
 E glutamate           6.0         45           2
 F phenylalanine       2.8         21           1
 G glycine             7.8         59           3
 H histidine           2.0         15           2
 I isoleucine          4.8         36           2
 K lysine              6.5         49           3
 L leucine             9.4         71           3
 M methionine          1.3         10           1
 N asparagine          4.7         35           2
 P proline             7.0         53           4
 Q glutamine           4.9         37           2
 R arginine            5.3         40           2
 S serine              8.4         63           2
 T threonine           4.7         35           1
 V valine              5.3         40           2
 W tryptophan          0.9          7           1
 Y tyrosine            2.1         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55184 
ANKRD50               0.017   ankyrin repeat domain 50 
ASB2                  0.016   ankyrin repeat and SOCS box-containing protein 2 [Ho...
ANKRD52               0.016   ankyrin repeat domain 52 
TNKS2                 0.016   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD54               0.015   ankyrin repeat domain 54 
ANKRD6                0.014   ankyrin repeat domain 6 
DAPK1                 0.014   death-associated protein kinase 1 
TNKS                  0.014   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD27               0.014   ankyrin repeat domain 27 (VPS9 domain) 
ANKRD1                0.014   cardiac ankyrin repeat protein 
KIDINS220             0.013   kinase D-interacting substrate of 220 kDa 
ZDHHC17               0.013   huntingtin interacting protein 14 
ANKRD18B              0.012   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.012   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.012   PREDICTED: ankyrin repeat domain 18B 
LOC730465             0.012   PREDICTED: similar to hCG1793014 
CASKIN2               0.012   cask-interacting protein 2 isoform b 
CASKIN2               0.012   cask-interacting protein 2 isoform a 
ANKRD23               0.012   diabetes related ankyrin repeat protein 
ANKS6                 0.011   ankyrin repeat and sterile alpha motif domain contai...
CASKIN1               0.011   CASK interacting protein 1 
CDKN2D                0.011   cyclin-dependent kinase inhibitor 2D 
CDKN2D                0.011   cyclin-dependent kinase inhibitor 2D 
ANK3                  0.011   ankyrin 3 isoform 1 
ANKHD1                0.011   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.011   ANKHD1-EIF4EBP3 protein 
LOC441869             0.011   hypothetical protein LOC441869 
ANKRD17               0.011   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.011   ankyrin repeat domain protein 17 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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