Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ANKRD54 Sequence: fasta or formatted (300aa) NCBI GI: 20270347
Description:

ankyrin repeat domain 54

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         35           4
 C cysteine            2.3          7           1
 D aspartate           7.7         23           2
 E glutamate           6.7         20           1
 F phenylalanine       1.7          5           1
 G glycine             9.0         27           4
 H histidine           4.0         12           1
 I isoleucine          2.0          6           2
 K lysine              3.0          9           1
 L leucine            13.3         40           3
 M methionine          1.7          5           1
 N asparagine          2.7          8           1
 P proline             4.3         13           1
 Q glutamine           5.7         17           2
 R arginine            8.7         26           2
 S serine              5.7         17           3
 T threonine           4.7         14           2
 V valine              4.3         13           1
 W tryptophan          0.3          1           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 54 
LOC441869             0.101   hypothetical protein LOC441869 
ANKRD50               0.101   ankyrin repeat domain 50 
ASB8                  0.099   ankyrin repeat and SOCS box-containing 8 
ANKRD23               0.097   diabetes related ankyrin repeat protein 
ANKRD28               0.090   ankyrin repeat domain 28 
ANK1                  0.090   ankyrin 1 isoform 9 
ANK1                  0.090   ankyrin 1 isoform 1 
ANK1                  0.090   ankyrin 1 isoform 3 
ANK1                  0.090   ankyrin 1 isoform 2 
ANK1                  0.090   ankyrin 1 isoform 4 
ANK2                  0.090   ankyrin 2 isoform 3 
ANK2                  0.090   ankyrin 2 isoform 2 
ANK2                  0.090   ankyrin 2 isoform 1 
ANK3                  0.090   ankyrin 3 isoform 1 
ANKK1                 0.088   ankyrin repeat and kinase domain containing 1 
TP53BP2               0.087   tumor protein p53 binding protein, 2 isoform 1 [Hom...
TP53BP2               0.087   tumor protein p53 binding protein, 2 isoform 2 
ANKRD52               0.085   ankyrin repeat domain 52 
DAPK1                 0.085   death-associated protein kinase 1 
TNKS2                 0.085   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD44               0.083   ankyrin repeat domain 44 
ANKRD46               0.083   ankyrin repeat domain 46 
TNNI3K                0.083   TNNI3 interacting kinase isoform b 
TNNI3K                0.083   TNNI3 interacting kinase isoform a 
PPP1R13L              0.081   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.081   protein phosphatase 1, regulatory subunit 13 like [H...
ASB7                  0.080   ankyrin repeat and SOCS box-containing protein 7 iso...
PSMD10                0.080   proteasome 26S non-ATPase subunit 10 isoform 1 
PSMD10                0.080   proteasome 26S non-ATPase subunit 10 isform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press