Guide to the Human Genome
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Name: ANKRD27 Sequence: fasta or formatted (1050aa) NCBI GI: 116063534
Description:

ankyrin repeat domain 27 (VPS9 domain)

Referenced in:

Ankyrin Family
Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         82           2
 C cysteine            3.0         32           1
 D aspartate           5.1         54           2
 E glutamate           7.1         75           2
 F phenylalanine       3.2         34           1
 G glycine             5.0         52           2
 H histidine           3.7         39           2
 I isoleucine          3.7         39           1
 K lysine              6.1         64           2
 L leucine            11.6        122           4
 M methionine          1.6         17           1
 N asparagine          4.0         42           2
 P proline             4.7         49           2
 Q glutamine           5.5         58           2
 R arginine            5.1         54           2
 S serine              9.0         94           3
 T threonine           4.3         45           1
 V valine              6.4         67           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.5         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 27 (VPS9 domain) 
ANK2                  0.069   ankyrin 2 isoform 3 
ANK2                  0.069   ankyrin 2 isoform 2 
ANK2                  0.069   ankyrin 2 isoform 1 
ANK1                  0.069   ankyrin 1 isoform 9 
ANK1                  0.069   ankyrin 1 isoform 1 
ANK1                  0.069   ankyrin 1 isoform 3 
ANK1                  0.069   ankyrin 1 isoform 2 
ANK1                  0.069   ankyrin 1 isoform 4 
ANK3                  0.068   ankyrin 3 isoform 1 
ANKRD50               0.062   ankyrin repeat domain 50 
ANKRD28               0.058   ankyrin repeat domain 28 
ANKRD44               0.051   ankyrin repeat domain 44 
ANKHD1                0.051   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.051   ANKHD1-EIF4EBP3 protein 
ANKRD52               0.050   ankyrin repeat domain 52 
TNKS2                 0.050   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TNKS                  0.050   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD17               0.050   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.050   ankyrin repeat domain protein 17 isoform b 
ANKK1                 0.048   ankyrin repeat and kinase domain containing 1 
ANKHD1                0.048   ankyrin repeat and KH domain containing 1 isoform 3 ...
ANKHD1                0.048   ankyrin repeat and KH domain containing 1 isoform 2 ...
INVS                  0.044   inversin isoform a 
INVS                  0.044   inversin isoform b 
RIPK4                 0.039   ankyrin repeat domain 3 
KIDINS220             0.038   kinase D-interacting substrate of 220 kDa 
CASKIN1               0.037   CASK interacting protein 1 
DAPK1                 0.036   death-associated protein kinase 1 
TANC2                 0.036   tetratricopeptide repeat, ankyrin repeat and coiled...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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