Guide to the Human Genome
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Name: ODZ1 Sequence: fasta or formatted (2725aa) NCBI GI: 110347400
Description:

odz, odd Oz/ten-m homolog 1 isoform 3

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [2732aa] odz, odd Oz/ten-m homolog 1 isoform 1
alt prot [2731aa] odz, odd Oz/ten-m homolog 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4        120           2
 C cysteine            3.1         85           2
 D aspartate           5.6        153           2
 E glutamate           5.4        146           3
 F phenylalanine       3.6         98           2
 G glycine             8.0        217           2
 H histidine           3.2         86           2
 I isoleucine          5.9        160           2
 K lysine              3.9        105           2
 L leucine             8.5        232           3
 M methionine          1.9         51           1
 N asparagine          5.0        137           2
 P proline             5.0        136           7
 Q glutamine           4.7        127           2
 R arginine            5.3        145           2
 S serine              8.0        217           3
 T threonine           6.9        189           3
 V valine              6.2        170           2
 W tryptophan          1.4         38           1
 Y tyrosine            4.1        113           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   odz, odd Oz/ten-m homolog 1 isoform 3 
ODZ1                  0.999   odz, odd Oz/ten-m homolog 1 isoform 1 
ODZ1                  0.998   odz, odd Oz/ten-m homolog 1 isoform 2 
ODZ4                  0.648   odz, odd Oz/ten-m homolog 4 
ODZ3                  0.606   odz, odd Oz/ten-m homolog 3 
ODZ2                  0.580   odz, odd Oz/ten-m homolog 2 
TNC                   0.033   tenascin C precursor 
TNXB                  0.032   tenascin XB isoform 1 precursor 
VWDE                  0.022   von Willebrand factor D and EGF domains 
NOTCH2                0.022   notch 2 preproprotein 
ITGBL1                0.021   integrin, beta-like 1 (with EGF-like repeat domains) ...
NOTCH1                0.021   notch1 preproprotein 
JAG1                  0.020   jagged 1 precursor 
MEGF11                0.020   multiple EGF-like-domains 11 
NOTCH3                0.020   Notch homolog 3 
NOTCH4                0.020   notch4 preproprotein 
JAG2                  0.019   jagged 2 isoform a precursor 
EYS                   0.019   eyes shut homolog isoform 1 
MEGF10                0.019   multiple EGF-like-domains 10 
CRB1                  0.018   crumbs homolog 1 precursor 
PEAR1                 0.018   platelet endothelial aggregation receptor 1 
MEGF6                 0.018   EGF-like-domain, multiple 3 
JAG2                  0.017   jagged 2 isoform b precursor 
DLL4                  0.017   delta-like 4 protein precursor 
DNER                  0.016   delta-notch-like EGF repeat-containing transmembran...
SNED1                 0.016   6720455I24Rik homolog 
LRP1B                 0.016   low density lipoprotein-related protein 1B precursor...
SCARF1                0.016   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.016   scavenger receptor class F, member 1 isoform 1 precu...
DLL1                  0.016   delta-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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