PBRM1 25300

Name: PBRM1	Sequence: fasta or formatted (1602aa)		NCBI GI: 30794372
Description: polybromo 1 isoform 1		Referenced in: Bromodomain Family Nonhistone Chromosomal Proteins
Other entries for this name: alt prot [1582aa] polybromo 1 isoform 4 alt prot [1582aa] polybromo 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 89 3 C cysteine 1.4 22 1 D aspartate 6.4 103 4 E glutamate 8.8 141 3 F phenylalanine 3.3 53 2 G glycine 5.0 80 2 H histidine 2.3 37 2 I isoleucine 4.8 77 2 K lysine 8.6 138 3 L leucine 8.9 143 2 M methionine 3.3 53 2 N asparagine 4.2 67 2 P proline 6.9 111 3 Q glutamine 3.8 61 2 R arginine 5.6 90 3 S serine 7.2 116 3 T threonine 3.2 52 2 V valine 5.3 85 2 W tryptophan 0.7 11 1 Y tyrosine 4.6 73 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 polybromo 1 isoform 1 PBRM1 0.950 polybromo 1 isoform 2 PBRM1 0.922 polybromo 1 isoform 4 SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA2 0.023 SWI/SNF-related matrix-associated actin-dependent re... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.023 SWI/SNF-related matrix-associated actin-dependent re... SMARCA2 0.020 SWI/SNF-related matrix-associated actin-dependent re... ASH1L 0.019 absent, small, or homeotic 1-like TAF1 0.018 TBP-associated factor 1 isoform 2 TAF1 0.018 TBP-associated factor 1 isoform 1 TAF1L 0.017 TBP-associated factor RNA polymerase 1-like BRWD1 0.015 bromodomain and WD repeat domain containing 1 isofor... BRWD1 0.015 bromodomain and WD repeat domain containing 1 isofor... PHIP 0.015 pleckstrin homology domain interacting protein [Homo... COL8A1 0.013 alpha 1 type VIII collagen precursor COL8A1 0.013 alpha 1 type VIII collagen precursor BRDT 0.012 testis-specific bromodomain protein BRDT 0.012 testis-specific bromodomain protein BRD2 0.012 bromodomain containing 2 BRD2 0.012 bromodomain containing 2 CPSF6 0.011 cleavage and polyadenylation specific factor 6, 68 ... SF1 0.011 splicing factor 1 isoform 2 SF1 0.011 splicing factor 1 isoform 1 WBP11 0.011 WW domain binding protein 11 KAT2B 0.011 K(lysine) acetyltransferase 2B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.