Guide to the Human Genome
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Name: LOC729595 Sequence: fasta or formatted (183aa) NCBI GI: 239742753
Description:

PREDICTED: similar to high mobility group box 3 isoform 2

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [201aa] PREDICTED: similar to high mobility group box 3 isoform 1
alt prot [204aa] PREDICTED: similar to high mobility group box 3
alt prot [204aa] PREDICTED: similar to high mobility group box 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         10           1
 C cysteine            1.1          2           1
 D aspartate           6.6         12           1
 E glutamate           9.3         17           3
 F phenylalanine       3.3          6           2
 G glycine             6.6         12           2
 H histidine           0.5          1           1
 I isoleucine          2.7          5           1
 K lysine             21.3         39           4
 L leucine             3.8          7           2
 M methionine          4.9          9           2
 N asparagine          2.7          5           2
 P proline             5.5         10           2
 Q glutamine           1.6          3           1
 R arginine            4.9          9           3
 S serine             10.4         19           2
 T threonine           2.7          5           1
 V valine              3.3          6           1
 W tryptophan          1.6          3           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to high mobility group box 3 iso... 
LOC729595             0.902   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.902   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.902   PREDICTED: similar to high mobility group box 3 iso...
HMGB3                 0.713   high-mobility group box 3 
LOC646993             0.641   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.641   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.641   PREDICTED: similar to high mobility group box 3 [Ho...
LOC441795             0.626   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.626   PREDICTED: high mobility group protein B3-like prot...
LOC203510             0.592   PREDICTED: similar to hCG1644442 
LOC203510             0.592   PREDICTED: similar to hCG1644442 
LOC203510             0.592   PREDICTED: hypothetical protein LOC203510 
HMGB2                 0.489   high-mobility group box 2 
HMGB2                 0.489   high-mobility group box 2 
HMGB2                 0.489   high-mobility group box 2 
HMGB1                 0.486   high-mobility group box 1 
HMGB1L1               0.463   high-mobility group box 1-like 1 
LOC645490             0.445   PREDICTED: similar to hCG1991922 
LOC645490             0.445   PREDICTED: similar to hCG1991922 
LOC645490             0.445   PREDICTED: similar to hCG1991922 
SP100                 0.428   nuclear antigen Sp100 isoform 2 
LOC644129             0.273   PREDICTED: similar to hCG1647425 
LOC644129             0.273   PREDICTED: similar to hCG1647425 
LOC644129             0.247   PREDICTED: similar to hCG1647425 
HMGB4                 0.224   HMG2 like isoform 1 
SSRP1                 0.167   structure specific recognition protein 1 
TOX4                  0.132   epidermal Langerhans cell protein LCP1 
TOX2                  0.129   TOX high mobility group box family member 2 isoform...
TOX2                  0.129   TOX high mobility group box family member 2 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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