Guide to the Human Genome
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Name: LOC645490 Sequence: fasta or formatted (488aa) NCBI GI: 169202818
Description:

PREDICTED: similar to hCG1991922

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [486aa] PREDICTED: similar to hCG1991922
alt prot [487aa] PREDICTED: similar to hCG1991922
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         36           2
 C cysteine            2.9         14           2
 D aspartate           6.8         33           2
 E glutamate          10.0         49           4
 F phenylalanine       4.7         23           2
 G glycine             6.8         33           2
 H histidine           1.4          7           1
 I isoleucine          2.7         13           1
 K lysine             11.1         54           4
 L leucine             9.0         44           3
 M methionine          1.2          6           1
 N asparagine          3.5         17           2
 P proline             7.2         35           2
 Q glutamine           2.7         13           1
 R arginine            5.1         25           2
 S serine              7.0         34           2
 T threonine           2.7         13           1
 V valine              3.5         17           2
 W tryptophan          1.0          5           1
 Y tyrosine            3.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1991922 
LOC645490             0.993   PREDICTED: similar to hCG1991922 
LOC645490             0.983   PREDICTED: similar to hCG1991922 
HMGB1                 0.308   high-mobility group box 1 
HMGB1L1               0.288   high-mobility group box 1-like 1 
SP100                 0.244   nuclear antigen Sp100 isoform 2 
HMGB2                 0.237   high-mobility group box 2 
HMGB2                 0.237   high-mobility group box 2 
HMGB2                 0.237   high-mobility group box 2 
HMGB3                 0.202   high-mobility group box 3 
LOC646993             0.190   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.190   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.190   PREDICTED: similar to high mobility group box 3 [Ho...
LOC441795             0.169   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.169   PREDICTED: high mobility group protein B3-like prot...
LOC203510             0.164   PREDICTED: similar to hCG1644442 
LOC203510             0.164   PREDICTED: similar to hCG1644442 
LOC203510             0.164   PREDICTED: hypothetical protein LOC203510 
LOC729595             0.164   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.164   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.164   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.157   PREDICTED: similar to high mobility group box 3 iso...
LOC644129             0.156   PREDICTED: similar to hCG1647425 
LOC644129             0.156   PREDICTED: similar to hCG1647425 
LOC644129             0.143   PREDICTED: similar to hCG1647425 
HMGB4                 0.088   HMG2 like isoform 1 
SSRP1                 0.061   structure specific recognition protein 1 
TOX                   0.058   thymus high mobility group box protein TOX 
TOX3                  0.056   TOX high mobility group box family member 3 isoform...
TOX3                  0.056   TOX high mobility group box family member 3 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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