Guide to the Human Genome
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Name: TOX4 Sequence: fasta or formatted (621aa) NCBI GI: 7662274
Description:

epidermal Langerhans cell protein LCP1

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         47           9
 C cysteine            1.1          7           1
 D aspartate           4.7         29           2
 E glutamate           5.3         33           2
 F phenylalanine       1.9         12           2
 G glycine             5.8         36           3
 H histidine           1.4          9           1
 I isoleucine          3.9         24           2
 K lysine              4.3         27           3
 L leucine             7.6         47           2
 M methionine          3.2         20           1
 N asparagine          2.9         18           2
 P proline            11.9         74           3
 Q glutamine           8.4         52           3
 R arginine            2.4         15           2
 S serine             10.5         65           3
 T threonine           7.4         46           2
 V valine              7.7         48           3
 W tryptophan          0.5          3           1
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   epidermal Langerhans cell protein LCP1 
TOX3                  0.263   TOX high mobility group box family member 3 isoform...
TOX3                  0.258   TOX high mobility group box family member 3 isoform...
TOX                   0.216   thymus high mobility group box protein TOX 
TOX2                  0.165   TOX high mobility group box family member 2 isoform...
TOX2                  0.162   TOX high mobility group box family member 2 isoform...
TOX2                  0.162   TOX high mobility group box family member 2 isoform ...
TOX2                  0.128   TOX high mobility group box family member 2 isoform...
LOC645490             0.041   PREDICTED: similar to hCG1991922 
LOC645490             0.041   PREDICTED: similar to hCG1991922 
LOC645490             0.041   PREDICTED: similar to hCG1991922 
SSRP1                 0.040   structure specific recognition protein 1 
HMGB1                 0.040   high-mobility group box 1 
HMGB2                 0.039   high-mobility group box 2 
HMGB2                 0.039   high-mobility group box 2 
HMGB2                 0.039   high-mobility group box 2 
LOC729595             0.038   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.038   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.038   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.038   PREDICTED: similar to high mobility group box 3 iso...
SP100                 0.037   nuclear antigen Sp100 isoform 2 
HMGB3                 0.036   high-mobility group box 3 
HMGB1L1               0.036   high-mobility group box 1-like 1 
HMG20B                0.035   high-mobility group 20B 
MUC2                  0.034   mucin 2 precursor 
HMGB4                 0.034   HMG2 like isoform 1 
HMGB4                 0.034   HMG2 like isoform 2 
HMGXB4                0.033   high-mobility group protein 2-like 1 
LOC646993             0.032   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.032   PREDICTED: similar to high mobility group box 3 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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