Guide to the Human Genome
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Name: TOX3 Sequence: fasta or formatted (576aa) NCBI GI: 226054295
Description:

TOX high mobility group box family member 3 isoform 1

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [571aa] TOX high mobility group box family member 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         51           3
 C cysteine            0.2          1           1
 D aspartate           3.1         18           1
 E glutamate           3.5         20           2
 F phenylalanine       2.6         15           2
 G glycine             4.0         23           2
 H histidine           3.3         19           2
 I isoleucine          4.2         24           1
 K lysine              4.0         23           6
 L leucine             7.8         45           3
 M methionine          3.8         22           1
 N asparagine          3.6         21           4
 P proline             8.7         50           3
 Q glutamine          17.2         99          10
 R arginine            2.6         15           1
 S serine             11.3         65           3
 T threonine           5.6         32           2
 V valine              3.8         22           1
 W tryptophan          0.2          1           1
 Y tyrosine            1.7         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TOX high mobility group box family member 3 isoform... 
TOX3                  0.942   TOX high mobility group box family member 3 isoform...
TOX                   0.320   thymus high mobility group box protein TOX 
TOX4                  0.283   epidermal Langerhans cell protein LCP1 
TOX2                  0.244   TOX high mobility group box family member 2 isoform...
TOX2                  0.227   TOX high mobility group box family member 2 isoform...
TOX2                  0.227   TOX high mobility group box family member 2 isoform ...
TOX2                  0.188   TOX high mobility group box family member 2 isoform...
MED15                 0.067   mediator complex subunit 15 isoform a 
MED15                 0.067   mediator complex subunit 15 isoform b 
MAML2                 0.065   mastermind-like 2 
MLL2                  0.065   myeloid/lymphoid or mixed-lineage leukemia 2 
MED12                 0.064   mediator complex subunit 12 
FOXP2                 0.063   forkhead box P2 isoform I 
FOXP2                 0.062   forkhead box P2 isoform II 
PAXIP1                0.062   PAX interacting protein 1 
FOXP2                 0.061   forkhead box P2 isoform III 
ZNF853                0.060   zinc finger protein 853 
BMP2K                 0.051   BMP-2 inducible kinase isoform a 
BMP2K                 0.051   BMP-2 inducible kinase isoform b 
LOC645490             0.050   PREDICTED: similar to hCG1991922 
LOC645490             0.050   PREDICTED: similar to hCG1991922 
LOC645490             0.050   PREDICTED: similar to hCG1991922 
HMGB1                 0.049   high-mobility group box 1 
SSRP1                 0.049   structure specific recognition protein 1 
EP400                 0.047   E1A binding protein p400 
SP100                 0.047   nuclear antigen Sp100 isoform 2 
HMGB2                 0.047   high-mobility group box 2 
HMGB2                 0.047   high-mobility group box 2 
HMGB2                 0.047   high-mobility group box 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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