LOC646993 1195

Name: LOC646993	Sequence: fasta or formatted (208aa)		NCBI GI: 113420668
Description: PREDICTED: similar to high mobility group box 3		Referenced in: Nonhistone Chromosomal Proteins
Other entries for this name: alt mRNA [208aa] PREDICTED: similar to high mobility group box 3 alt prot [208aa] PREDICTED: similar to high mobility group box 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 14 2 C cysteine 3.4 7 2 D aspartate 6.2 13 1 E glutamate 12.5 26 5 F phenylalanine 4.8 10 2 G glycine 6.2 13 2 H histidine 0.5 1 1 I isoleucine 1.4 3 1 K lysine 19.2 40 3 L leucine 3.4 7 1 M methionine 2.9 6 1 N asparagine 3.8 8 2 P proline 6.2 13 2 Q glutamine 1.9 4 1 R arginine 3.4 7 1 S serine 6.2 13 2 T threonine 1.9 4 1 V valine 5.3 11 2 W tryptophan 1.0 2 1 Y tyrosine 2.9 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 1.000 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.993 PREDICTED: similar to high mobility group box 3 [Ho... HMGB3 0.831 high-mobility group box 3 LOC441795 0.731 PREDICTED: high mobility group protein B3-like prot... LOC441795 0.731 PREDICTED: high mobility group protein B3-like prot... LOC203510 0.692 PREDICTED: similar to hCG1644442 LOC203510 0.692 PREDICTED: similar to hCG1644442 LOC203510 0.692 PREDICTED: hypothetical protein LOC203510 LOC729595 0.680 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.680 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.680 PREDICTED: similar to high mobility group box 3 iso... HMGB1 0.631 high-mobility group box 1 HMGB2 0.611 high-mobility group box 2 HMGB2 0.611 high-mobility group box 2 HMGB2 0.611 high-mobility group box 2 HMGB1L1 0.594 high-mobility group box 1-like 1 LOC729595 0.545 PREDICTED: similar to high mobility group box 3 iso... SP100 0.469 nuclear antigen Sp100 isoform 2 LOC645490 0.457 PREDICTED: similar to hCG1991922 LOC645490 0.457 PREDICTED: similar to hCG1991922 LOC645490 0.450 PREDICTED: similar to hCG1991922 HMGB4 0.244 HMG2 like isoform 1 LOC644129 0.240 PREDICTED: similar to hCG1647425 LOC644129 0.240 PREDICTED: similar to hCG1647425 LOC644129 0.203 PREDICTED: similar to hCG1647425 SSRP1 0.134 structure specific recognition protein 1 HMGB4 0.122 HMG2 like isoform 2 LOC645101 0.105 PREDICTED: similar to high-mobility group box 2 [Ho... LOC645101 0.105 PREDICTED: similar to high-mobility group box 2 [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.