Guide to the Human Genome
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Name: LOC646993 Sequence: fasta or formatted (208aa) NCBI GI: 113420668
Description:

PREDICTED: similar to high mobility group box 3

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [208aa] PREDICTED: similar to high mobility group box 3
alt prot [208aa] PREDICTED: similar to high mobility group box 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         14           2
 C cysteine            3.4          7           2
 D aspartate           6.2         13           1
 E glutamate          12.5         26           5
 F phenylalanine       4.8         10           2
 G glycine             6.2         13           2
 H histidine           0.5          1           1
 I isoleucine          1.4          3           1
 K lysine             19.2         40           3
 L leucine             3.4          7           1
 M methionine          2.9          6           1
 N asparagine          3.8          8           2
 P proline             6.2         13           2
 Q glutamine           1.9          4           1
 R arginine            3.4          7           1
 S serine              6.2         13           2
 T threonine           1.9          4           1
 V valine              5.3         11           2
 W tryptophan          1.0          2           1
 Y tyrosine            2.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to high mobility group box 3 [Ho... 
LOC646993             1.000   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.993   PREDICTED: similar to high mobility group box 3 [Ho...
HMGB3                 0.831   high-mobility group box 3 
LOC441795             0.731   PREDICTED: high mobility group protein B3-like prot...
LOC441795             0.731   PREDICTED: high mobility group protein B3-like prot...
LOC203510             0.692   PREDICTED: similar to hCG1644442 
LOC203510             0.692   PREDICTED: similar to hCG1644442 
LOC203510             0.692   PREDICTED: hypothetical protein LOC203510 
LOC729595             0.680   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.680   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.680   PREDICTED: similar to high mobility group box 3 iso...
HMGB1                 0.631   high-mobility group box 1 
HMGB2                 0.611   high-mobility group box 2 
HMGB2                 0.611   high-mobility group box 2 
HMGB2                 0.611   high-mobility group box 2 
HMGB1L1               0.594   high-mobility group box 1-like 1 
LOC729595             0.545   PREDICTED: similar to high mobility group box 3 iso...
SP100                 0.469   nuclear antigen Sp100 isoform 2 
LOC645490             0.457   PREDICTED: similar to hCG1991922 
LOC645490             0.457   PREDICTED: similar to hCG1991922 
LOC645490             0.450   PREDICTED: similar to hCG1991922 
HMGB4                 0.244   HMG2 like isoform 1 
LOC644129             0.240   PREDICTED: similar to hCG1647425 
LOC644129             0.240   PREDICTED: similar to hCG1647425 
LOC644129             0.203   PREDICTED: similar to hCG1647425 
SSRP1                 0.134   structure specific recognition protein 1 
HMGB4                 0.122   HMG2 like isoform 2 
LOC645101             0.105   PREDICTED: similar to high-mobility group box 2 [Ho...
LOC645101             0.105   PREDICTED: similar to high-mobility group box 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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