Guide to the Human Genome
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Name: PBRM1 Sequence: fasta or formatted (1582aa) NCBI GI: 93102371
Description:

polybromo 1 isoform 2

Referenced in:

Bromodomain Family
Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [1602aa] polybromo 1 isoform 1
alt prot [1582aa] polybromo 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         90           3
 C cysteine            1.3         21           1
 D aspartate           6.4        102           4
 E glutamate           8.8        139           3
 F phenylalanine       3.2         50           2
 G glycine             5.1         81           2
 H histidine           2.3         37           2
 I isoleucine          4.8         76           2
 K lysine              8.7        138           3
 L leucine             8.7        138           2
 M methionine          3.3         52           2
 N asparagine          4.3         68           2
 P proline             6.7        106           3
 Q glutamine           3.7         58           2
 R arginine            5.8         92           3
 S serine              7.5        118           3
 T threonine           3.2         51           2
 V valine              5.3         84           2
 W tryptophan          0.6          9           1
 Y tyrosine            4.6         72           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polybromo 1 isoform 2 
PBRM1                 0.965   polybromo 1 isoform 1 
PBRM1                 0.918   polybromo 1 isoform 4 
SMARCA4               0.025   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.025   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA2               0.024   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.023   SWI/SNF-related matrix-associated actin-dependent re...
BRDT                  0.022   testis-specific bromodomain protein 
BRDT                  0.022   testis-specific bromodomain protein 
SMARCA2               0.020   SWI/SNF-related matrix-associated actin-dependent re...
TAF1                  0.019   TBP-associated factor 1 isoform 2 
TAF1                  0.019   TBP-associated factor 1 isoform 1 
ASH1L                 0.018   absent, small, or homeotic 1-like 
TAF1L                 0.018   TBP-associated factor RNA polymerase 1-like 
BRWD1                 0.016   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.016   bromodomain and WD repeat domain containing 1 isofor...
PHIP                  0.015   pleckstrin homology domain interacting protein [Homo...
COL8A1                0.013   alpha 1 type VIII collagen precursor 
COL8A1                0.013   alpha 1 type VIII collagen precursor 
WBP11                 0.012   WW domain binding protein 11 
CPSF6                 0.012   cleavage and polyadenylation specific factor 6, 68 ...
SF1                   0.011   splicing factor 1 isoform 2 
SF1                   0.011   splicing factor 1 isoform 1 
KAT2B                 0.011   K(lysine) acetyltransferase 2B 
BRD3                  0.011   bromodomain containing protein 3 
BRD4                  0.011   bromodomain-containing protein 4 isoform short 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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