Guide to the Human Genome
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Name: TOX Sequence: fasta or formatted (526aa) NCBI GI: 7662322
Description:

thymus high mobility group box protein TOX

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         34           3
 C cysteine            1.1          6           1
 D aspartate           4.4         23           2
 E glutamate           3.6         19           2
 F phenylalanine       1.7          9           2
 G glycine             5.7         30           2
 H histidine           3.8         20           1
 I isoleucine          3.0         16           2
 K lysine              5.3         28           6
 L leucine             7.0         37           2
 M methionine          4.8         25           2
 N asparagine          5.7         30           2
 P proline            13.3         70           4
 Q glutamine           8.4         44           2
 R arginine            2.3         12           1
 S serine             10.3         54           3
 T threonine           4.6         24           2
 V valine              4.6         24           2
 W tryptophan          0.4          2           1
 Y tyrosine            3.6         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thymus high mobility group box protein TOX 
TOX2                  0.348   TOX high mobility group box family member 2 isoform...
TOX3                  0.332   TOX high mobility group box family member 3 isoform...
TOX2                  0.321   TOX high mobility group box family member 2 isoform...
TOX2                  0.321   TOX high mobility group box family member 2 isoform ...
TOX3                  0.318   TOX high mobility group box family member 3 isoform...
TOX2                  0.283   TOX high mobility group box family member 2 isoform...
TOX4                  0.245   epidermal Langerhans cell protein LCP1 
LOC645490             0.053   PREDICTED: similar to hCG1991922 
LOC645490             0.053   PREDICTED: similar to hCG1991922 
LOC645490             0.053   PREDICTED: similar to hCG1991922 
HMGB1                 0.051   high-mobility group box 1 
SP100                 0.049   nuclear antigen Sp100 isoform 2 
HMGB2                 0.048   high-mobility group box 2 
HMGB2                 0.048   high-mobility group box 2 
HMGB2                 0.048   high-mobility group box 2 
SSRP1                 0.047   structure specific recognition protein 1 
HMGB1L1               0.046   high-mobility group box 1-like 1 
HMG20B                0.043   high-mobility group 20B 
HMGB3                 0.043   high-mobility group box 3 
LOC729595             0.042   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.042   PREDICTED: similar to high mobility group box 3 [Ho...
LOC729595             0.042   PREDICTED: similar to high mobility group box 3 iso...
LOC729595             0.042   PREDICTED: similar to high mobility group box 3 iso...
HMGB4                 0.037   HMG2 like isoform 1 
HMGB4                 0.037   HMG2 like isoform 2 
LOC646993             0.036   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.036   PREDICTED: similar to high mobility group box 3 [Ho...
LOC646993             0.036   PREDICTED: similar to high mobility group box 3 [Ho...
HMG20A                0.036   high-mobility group 20A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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