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Search of human proteins with 149158700
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149158700 major histocompatibility complex, class I, F
isoform 3 precursor [Homo sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149158700 major histocompatibility complex, class I, F isofor... 516 e-147
gi|149158702 major histocompatibility complex, class I, F isofor... 421 e-118
gi|149158698 major histocompatibility complex, class I, F isofor... 421 e-118
gi|52630342 major histocompatibility complex, class I, C precurs... 321 4e-88
gi|17986001 major histocompatibility complex, class I, B precurs... 320 8e-88
gi|4504415 major histocompatibility complex, class I, G precurso... 311 3e-85
gi|24797067 major histocompatibility complex, class I, A precurs... 310 8e-85
gi|62912479 major histocompatibility complex, class I, E precurs... 273 1e-73
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 258 3e-69
gi|4504417 major histocompatibility complex, class I-related [Ho... 137 9e-33
gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens] 113 1e-25
gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sap... 93 3e-19
gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sa... 92 3e-19
gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa... 79 4e-15
gi|4557751 MHC class I polypeptide-related sequence A [Homo sapi... 70 2e-12
gi|167857788 MHC class I polypeptide-related sequence B [Homo sa... 69 3e-12
gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [H... 69 5e-12
gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Hom... 69 5e-12
gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sa... 57 2e-08
gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sa... 56 3e-08
gi|21040341 hemochromatosis protein isoform 3 precursor [Homo sa... 47 2e-05
gi|13376824 UL16 binding protein 2 [Homo sapiens] 47 2e-05
gi|21040343 hemochromatosis protein isoform 4 precursor [Homo sa... 46 4e-05
gi|34335272 endothelial protein C receptor precursor [Homo sapiens] 45 6e-05
gi|13375656 UL16 binding protein 3 [Homo sapiens] 44 1e-04
gi|126723295 retinoic acid early transcript 1L [Homo sapiens] 40 0.003
gi|130484306 retinoic acid early transcript 1G [Homo sapiens] 37 0.013
gi|21040249 retinoic acid early transcript 1E [Homo sapiens] 33 0.24
gi|7706573 stromal cell derived factor 4 isoform 1 precursor [Ho... 33 0.31
gi|18699732 stromal cell derived factor 4 isoform 2 precursor [H... 33 0.31
>gi|149158700 major histocompatibility complex, class I, F isoform 3
precursor [Homo sapiens]
Length = 254
Score = 516 bits (1330), Expect = e-147
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
Sbjct: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
Sbjct: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
Sbjct: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
Query: 181 LEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKK 240
LEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKK
Sbjct: 181 LEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKK 240
Query: 241 SSDRNRGSYSQAAV 254
SSDRNRGSYSQAAV
Sbjct: 241 SSDRNRGSYSQAAV 254
>gi|149158702 major histocompatibility complex, class I, F isoform 1
precursor [Homo sapiens]
Length = 442
Score = 421 bits (1083), Expect = e-118
Identities = 203/204 (99%), Positives = 204/204 (100%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
Sbjct: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
Sbjct: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
Sbjct: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
Query: 181 LEGECLELLRRYLENGKETLQRAE 204
LEGECLELLRRYLENGKETLQRA+
Sbjct: 181 LEGECLELLRRYLENGKETLQRAD 204
Score = 99.8 bits (247), Expect = 2e-21
Identities = 51/52 (98%), Positives = 51/52 (98%)
Query: 202 RAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAA 253
R EQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAA
Sbjct: 294 RWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAA 345
>gi|149158698 major histocompatibility complex, class I, F isoform 2
precursor [Homo sapiens]
Length = 346
Score = 421 bits (1083), Expect = e-118
Identities = 203/204 (99%), Positives = 204/204 (100%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD
Sbjct: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN
Sbjct: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY
Sbjct: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
Query: 181 LEGECLELLRRYLENGKETLQRAE 204
LEGECLELLRRYLENGKETLQRA+
Sbjct: 181 LEGECLELLRRYLENGKETLQRAD 204
Score = 101 bits (251), Expect = 7e-22
Identities = 52/53 (98%), Positives = 52/53 (98%)
Query: 202 RAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAV 254
R EQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAV
Sbjct: 294 RWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAV 346
>gi|52630342 major histocompatibility complex, class I, C precursor
[Homo sapiens]
Length = 366
Score = 321 bits (822), Expect = 4e-88
Identities = 158/204 (77%), Positives = 172/204 (84%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
MAPR+LLLLLSG LALT+TWA SHS+RYF TAVSRPGRGEPR+I+V YVDDTQF+RFDSD
Sbjct: 4 MAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSD 63
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
AA PR EPR PWVEQEGP+YW+ T K AQ DRV+LRNL YNQSE GSHTLQ M+
Sbjct: 64 AASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMS 123
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GCD+GPDGRLLRGY Q AYDGKDYI+LNEDLRSWTAADT AQITQR EA AE+ R Y
Sbjct: 124 GCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAY 183
Query: 181 LEGECLELLRRYLENGKETLQRAE 204
LEG C+E LRRYLENGKETLQRAE
Sbjct: 184 LEGTCVEWLRRYLENGKETLQRAE 207
Score = 55.1 bits (131), Expect = 6e-08
Identities = 33/51 (64%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 204 EQSPQPTIPIVGIVAGLVVLGAV-VTGAVVAAVMWRKKSSDRNRGSYSQAA 253
E S QPTIPI+GIVAGL VL + V GAVV A+M R+KSS GS SQAA
Sbjct: 299 EPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAA 349
>gi|17986001 major histocompatibility complex, class I, B precursor
[Homo sapiens]
Length = 362
Score = 320 bits (820), Expect = 8e-88
Identities = 154/204 (75%), Positives = 176/204 (86%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
MAPR++LLLLS ALALT+TWAGSHS+RYF T+VSRPGRGEPR+I+V YVDDTQF+RFDSD
Sbjct: 4 MAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSD 63
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
AA PR EPR PW+EQEGP+YW+ T KA AQTDR +LRNL YNQSEAGSHTLQ M
Sbjct: 64 AASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMY 123
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GCD+GPDGRLLRG+ Q+AYDGKDYI+LNEDLRSWTAADT AQITQR +EA AE+ R Y
Sbjct: 124 GCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAY 183
Query: 181 LEGECLELLRRYLENGKETLQRAE 204
LEGEC+E LRRYLENGK+ L+RA+
Sbjct: 184 LEGECVEWLRRYLENGKDKLERAD 207
Score = 66.6 bits (161), Expect = 2e-11
Identities = 37/52 (71%), Positives = 39/52 (75%)
Query: 202 RAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAA 253
R E S Q T+PIVGIVAGL VL VV GAVVAAVM R+KSS GSYSQAA
Sbjct: 297 RWEPSSQSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAA 348
>gi|4504415 major histocompatibility complex, class I, G precursor
[Homo sapiens]
Length = 338
Score = 311 bits (797), Expect = 3e-85
Identities = 151/204 (74%), Positives = 171/204 (83%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
MAPR+L LLLSGAL LT+TWAGSHS+RYFS AVSRPGRGEPR+IA+ YVDDTQF+RFDSD
Sbjct: 4 MAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSD 63
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
+A PRMEPR PWVEQEGP+YWE T KA+AQTDR+ L+ L YNQSEA SHTLQ M
Sbjct: 64 SACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMI 123
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GCD+G DGRLLRGY Q+AYDGKDY++LNEDLRSWTAADT AQI++R EA AE+ R Y
Sbjct: 124 GCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAY 183
Query: 181 LEGECLELLRRYLENGKETLQRAE 204
LEG C+E L RYLENGKE LQRA+
Sbjct: 184 LEGTCVEWLHRYLENGKEMLQRAD 207
Score = 67.0 bits (162), Expect = 1e-11
Identities = 34/42 (80%), Positives = 37/42 (88%)
Query: 202 RAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSD 243
R +QS PTIPI+GIVAGLVVL AVVTGA VAAV+WRKKSSD
Sbjct: 297 RWKQSSLPTIPIMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD 338
>gi|24797067 major histocompatibility complex, class I, A precursor
[Homo sapiens]
Length = 365
Score = 310 bits (794), Expect = 8e-85
Identities = 151/204 (74%), Positives = 169/204 (82%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
MAPR+LLLLLSGALALT TWAGSHS+RYF T+VSRPGRGEPR+IAV YVDDTQF+RFDSD
Sbjct: 4 MAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSD 63
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
AA RMEPR PW+EQEGP+YW+ T KA +QTDRV L L YNQSEAGSHT+Q M
Sbjct: 64 AASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMY 123
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GCD+G DGR LRGY Q AYDGKDYI+LNEDLRSWTAAD AQIT+R +EA AE+ R Y
Sbjct: 124 GCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAY 183
Query: 181 LEGECLELLRRYLENGKETLQRAE 204
L+G C+E LRRYLENGKETLQR +
Sbjct: 184 LDGTCVEWLRRYLENGKETLQRTD 207
Score = 84.7 bits (208), Expect = 7e-17
Identities = 42/52 (80%), Positives = 47/52 (90%)
Query: 202 RAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAA 253
R E S QPTIPIVGI+AGLV+LGAV+TGAVVAAVMWR+KSSDR GSY+QAA
Sbjct: 297 RWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAA 348
>gi|62912479 major histocompatibility complex, class I, E precursor
[Homo sapiens]
Length = 358
Score = 273 bits (698), Expect = 1e-73
Identities = 135/204 (66%), Positives = 156/204 (76%)
Query: 1 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSD 60
M +LLLLLS ALALT TWAGSHSL+YF T+VSRPGRGEPR+I+V YVDDTQF+RFD+D
Sbjct: 1 MVDGTLLLLLSEALALTQTWAGSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDND 60
Query: 61 AAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
AA PRM PR PW+EQEG +YW+ T A+ AQ RV LR L YNQSEAGSHTLQ M+
Sbjct: 61 AASPRMVPRAPWMEQEGSEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMH 120
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTY 180
GC++GPDGR LRGY Q AYDGKDY++LNEDLRSWTA DT AQI+++ AE R Y
Sbjct: 121 GCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAY 180
Query: 181 LEGECLELLRRYLENGKETLQRAE 204
LE C+E L +YLE GKETL E
Sbjct: 181 LEDTCVEWLHKYLEKGKETLLHLE 204
Score = 72.4 bits (176), Expect = 4e-13
Identities = 36/51 (70%), Positives = 44/51 (86%)
Query: 202 RAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQA 252
R + + QPTIPIVGI+AGLV+LG+VV+GAVVAAV+WRKKSS GSYS+A
Sbjct: 294 RWKPASQPTIPIVGIIAGLVLLGSVVSGAVVAAVIWRKKSSGGKGGSYSKA 344
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 258 bits (660), Expect = 3e-69
Identities = 128/183 (69%), Positives = 144/183 (78%)
Query: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
GSHSLRYF TAVSRPG GEPR+I+V YVDDTQF+RFDSD+A PR EPR PW+EQEGP+YW
Sbjct: 38 GSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDSANPREEPRAPWMEQEGPEYW 97
Query: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
+ T K AQ+ RV L L YNQSEAGSHTLQ M GCD+GPDGR LRG+ Q AYDG
Sbjct: 98 DEQTRIVKDTAQSFRVGLNTLRGYYNQSEAGSHTLQLMYGCDVGPDGRFLRGFMQDAYDG 157
Query: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
+DYI+LNEDLRSWTAADT AQIT+R EA AE R YLEG C+E LRRYLE GK+ L
Sbjct: 158 RDYIALNEDLRSWTAADTAAQITKRKREAAGAAERQRNYLEGRCVEGLRRYLETGKDALL 217
Query: 202 RAE 204
RA+
Sbjct: 218 RAD 220
Score = 37.4 bits (85), Expect = 0.013
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 194 ENGKETLQRAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDR 244
E +E L + PQ + I+GI+ GLV+L V V AV+WRKK S R
Sbjct: 301 EGLQEPLTLRWEPPQTSFLIMGIIVGLVLL---VVALVAGAVIWRKKRSGR 348
>gi|4504417 major histocompatibility complex, class I-related [Homo
sapiens]
Length = 341
Score = 137 bits (345), Expect = 9e-33
Identities = 82/202 (40%), Positives = 116/202 (57%), Gaps = 7/202 (3%)
Query: 5 SLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIP 64
+ LL L L + + + +HSLRYF VS P G P +I+V YVD +DS
Sbjct: 6 AFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS--VTR 63
Query: 65 RMEPREPWV-EQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCD 123
+ EPR PW+ E P +WE T + Q +V L+ L R YN S GSHT Q M GC+
Sbjct: 64 QKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHS--GSHTYQRMIGCE 121
Query: 124 MGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF-RTYLE 182
+ DG G+ Q+AYDG+D++ N+D SW A D VA ++ +EA ++ + + +LE
Sbjct: 122 LLEDGSTT-GFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLE 180
Query: 183 GECLELLRRYLENGKETLQRAE 204
EC+ L+R+LE GK+TLQR E
Sbjct: 181 EECIAWLKRFLEYGKDTLQRTE 202
>gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens]
Length = 298
Score = 113 bits (283), Expect = 1e-25
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 5/199 (2%)
Query: 7 LLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRM 66
LLLL G + G +SL Y T +S+ P + A+ ++D QF R++S +
Sbjct: 11 LLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDR--KS 68
Query: 67 EPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGP 126
+P W + EG + W+ + KA L++++ YN S GSH LQG GC++
Sbjct: 69 QPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSN-GSHVLQGRFGCEI-E 126
Query: 127 DGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-YAEEFRTYLEGEC 185
+ R + ++ YDGKDYI N+++ +W D AQIT++ +EAE Y + + YLE EC
Sbjct: 127 NNRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRAKAYLEEEC 186
Query: 186 LELLRRYLENGKETLQRAE 204
LR+YL+ K L R +
Sbjct: 187 PATLRKYLKYSKNILDRQD 205
>gi|4504377 hemochromatosis protein isoform 1 precursor [Homo
sapiens]
Length = 348
Score = 92.8 bits (229), Expect = 3e-19
Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 9/221 (4%)
Query: 3 PRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAA 62
P LLL+L L SHSL Y S G + A+ YVDD F+ +D ++
Sbjct: 7 PALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESR 66
Query: 63 IPRMEPREPWVEQE-GPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNG 121
R+EPR PWV Q W + K V ++ +N S+ SHTLQ + G
Sbjct: 67 --RVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKE-SHTLQVILG 123
Query: 122 CDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEY-AEEFRTY 180
C+M D GY ++ YDG+D++ D W AA+ A T+ +E + A + R Y
Sbjct: 124 CEMQEDNS-TEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAY 182
Query: 181 LEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLV 221
LE +C L++ LE G+ L +Q P + + V V
Sbjct: 183 LERDCPAQLQQLLELGRGVL---DQQVPPLVKVTHHVTSSV 220
>gi|21040347 hemochromatosis protein isoform 6 precursor [Homo
sapiens]
Length = 334
Score = 92.4 bits (228), Expect = 3e-19
Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 6/202 (2%)
Query: 3 PRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAA 62
P LLL+L L SHSL Y S G + A+ YVDD F+ +D ++
Sbjct: 7 PALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESR 66
Query: 63 IPRMEPREPWVEQE-GPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNG 121
R+EPR PWV Q W + K V ++ +N S+ SHTLQ + G
Sbjct: 67 --RVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKE-SHTLQVILG 123
Query: 122 CDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEY-AEEFRTY 180
C+M D GY ++ YDG+D++ D W AA+ A T+ +E + A + R Y
Sbjct: 124 CEMQEDNS-TEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRARQNRAY 182
Query: 181 LEGECLELLRRYLENGKETLQR 202
LE +C L++ LE G+ L +
Sbjct: 183 LERDCPAQLQQLLELGRGVLDQ 204
>gi|21040353 hemochromatosis protein isoform 9 precursor [Homo
sapiens]
Length = 325
Score = 79.0 bits (193), Expect = 4e-15
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 9/182 (4%)
Query: 42 RYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQE-GPQYWEWTTGYAKANAQTDRVALR 100
R + + YVDD F+ +D ++ R+EPR PWV Q W + K V
Sbjct: 23 RLLPLGYVDDQLFVFYDHESR--RVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFW 80
Query: 101 NLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTV 160
++ +N S+ SHTLQ + GC+M D GY ++ YDG+D++ D W AA+
Sbjct: 81 TIMENHNHSKE-SHTLQVILGCEMQEDNST-EGYWKYGYDGQDHLEFCPDTLDWRAAEPR 138
Query: 161 AQITQRFYEAEEY-AEEFRTYLEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAG 219
A T+ +E + A + R YLE +C L++ LE G+ L +Q P + + V
Sbjct: 139 AWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVL---DQQVPPLVKVTHHVTS 195
Query: 220 LV 221
V
Sbjct: 196 SV 197
>gi|4557751 MHC class I polypeptide-related sequence A [Homo
sapiens]
Length = 383
Score = 70.1 bits (170), Expect = 2e-12
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 20/202 (9%)
Query: 6 LLLLLSGALALTDTWAGS--HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAI 63
+ LLL+G A + HSLRY T +S G + ++ ++D FLR D
Sbjct: 6 VFLLLAGIFPFAPPGAAAEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCDRQKC- 64
Query: 64 PRMEPREPWVEQE-GPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGC 122
R +P+ W E G + W+ T N + LR L + G H+LQ + C
Sbjct: 65 -RAKPQGQWAEDVLGNKTWDRETRDLTGNGKD----LRMTLAHIKDQKEGLHSLQEIRVC 119
Query: 123 DMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWT-----AADTVAQITQRFYEAEEYAEEF 177
++ D H + YDG+ ++S N + + WT A T+A + F +E A +
Sbjct: 120 EIHEDNSTRSSQHFY-YDGELFLSQNLETKEWTMPQSSRAQTLAMNVRNF--LKEDAMKT 176
Query: 178 RTY---LEGECLELLRRYLENG 196
+T+ + +CL+ LRRYL++G
Sbjct: 177 KTHYHAMHADCLQELRRYLKSG 198
>gi|167857788 MHC class I polypeptide-related sequence B [Homo
sapiens]
Length = 383
Score = 69.3 bits (168), Expect = 3e-12
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query: 21 AGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQE-GPQ 79
A HSLRY +S+ G + ++A ++D FLR+D R +P+ W E G +
Sbjct: 23 AEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYDRQKR--RAKPQGQWAENVLGAK 80
Query: 80 YWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAY 139
W+ T N Q LR L + G H+LQ + C++ D RG Y
Sbjct: 81 TWDTETEDLTENGQD----LRRTLTHIKDQKGGLHSLQEIRVCEIHEDSS-TRGSRHFYY 135
Query: 140 DGKDYISLNEDLRSWTA-----ADTVAQITQRFYEAEEYAEEFRTY---LEGECLELLRR 191
DG+ ++S N + + T A T+A F+ +E A + +T+ ++ +CL+ L+R
Sbjct: 136 DGELFLSQNLETQESTVPQSSRAQTLAMNVTNFW--KEDAMKTKTHYRAMQADCLQKLQR 193
Query: 192 YLENG 196
YL++G
Sbjct: 194 YLKSG 198
>gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 68.6 bits (166), Expect = 5e-12
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 6 LLLLLSGALALTDTWAGSH-SLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIP 64
LL LL G+L A SH SL Y TAVS P G P + ++ Q+L ++S
Sbjct: 14 LLFLLPGSLG-----AESHLSLLYHLTAVSSPAPGTPAFWVSGWLGPQQYLSYNSLRG-- 66
Query: 65 RMEPREPWV-EQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCD 123
EP WV E + YWE T + + A + L G +TLQG+ GC+
Sbjct: 67 EAEPCGAWVWENQVSWYWEKETTDLRIKEKLFLEAFKAL------GGKGPYTLQGLLGCE 120
Query: 124 MGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAA-DTVAQITQRFYEAEEYAEEFRTYLE 182
+GPD + + A +G+++++ + +W I+QR+ + ++ A + T+L
Sbjct: 121 LGPDNTSV-PTAKFALNGEEFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFLL 179
Query: 183 GECLELLRRYLENGKETLQRAE 204
C LR +LE G+ L+ E
Sbjct: 180 FSCPHRLREHLERGRGNLEWKE 201
>gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 68.6 bits (166), Expect = 5e-12
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 6 LLLLLSGALALTDTWAGSH-SLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIP 64
LL LL G+L A SH SL Y TAVS P G P + ++ Q+L ++S
Sbjct: 14 LLFLLPGSLG-----AESHLSLLYHLTAVSSPAPGTPAFWVSGWLGPQQYLSYNSLRG-- 66
Query: 65 RMEPREPWV-EQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCD 123
EP WV E + YWE T + + A + L G +TLQG+ GC+
Sbjct: 67 EAEPCGAWVWENQVSWYWEKETTDLRIKEKLFLEAFKAL------GGKGPYTLQGLLGCE 120
Query: 124 MGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAA-DTVAQITQRFYEAEEYAEEFRTYLE 182
+GPD + + A +G+++++ + +W I+QR+ + ++ A + T+L
Sbjct: 121 LGPDNTSV-PTAKFALNGEEFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFLL 179
Query: 183 GECLELLRRYLENGKETLQRAE 204
C LR +LE G+ L+ E
Sbjct: 180 FSCPHRLREHLERGRGNLEWKE 201
>gi|21040349 hemochromatosis protein isoform 7 precursor [Homo
sapiens]
Length = 260
Score = 56.6 bits (135), Expect = 2e-08
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 113 SHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE 172
SHTLQ + GC+M D GY ++ YDG+D++ D W AA+ A T+ +E +
Sbjct: 27 SHTLQVILGCEMQEDNST-EGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHK 85
Query: 173 Y-AEEFRTYLEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLV 221
A + R YLE +C L++ LE G+ L +Q P + + V V
Sbjct: 86 IRARQNRAYLERDCPAQLQQLLELGRGVL---DQQVPPLVKVTHHVTSSV 132
>gi|21040351 hemochromatosis protein isoform 8 precursor [Homo
sapiens]
Length = 246
Score = 56.2 bits (134), Expect = 3e-08
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 113 SHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE 172
SHTLQ + GC+M D GY ++ YDG+D++ D W AA+ A T+ +E +
Sbjct: 27 SHTLQVILGCEMQEDNST-EGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHK 85
Query: 173 Y-AEEFRTYLEGECLELLRRYLENGKETLQR 202
A + R YLE +C L++ LE G+ L +
Sbjct: 86 IRARQNRAYLERDCPAQLQQLLELGRGVLDQ 116
>gi|21040341 hemochromatosis protein isoform 3 precursor [Homo
sapiens]
Length = 242
Score = 47.0 bits (110), Expect = 2e-05
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 3 PRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAA 62
P LLL+L L SHSL Y S G + A+ YVDD F+ +D ++
Sbjct: 7 PALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESR 66
Query: 63 IPRMEPREPWVEQE-GPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
R+EPR PWV Q W + K V ++ +N S+ + + +N
Sbjct: 67 --RVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKVTTLRCRALN 123
>gi|13376824 UL16 binding protein 2 [Homo sapiens]
Length = 246
Score = 46.6 bits (109), Expect = 2e-05
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 42/247 (17%)
Query: 6 LLLLLSGALALTDTW-----AGSHSLRYFSTAVS--RPGRGEPRYIAVE-YVDDTQFLRF 57
LLLLLSG W A HSL Y T + RPG PR+ AV+ VD+ FL +
Sbjct: 15 LLLLLSG-------WSRAGRADPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHY 64
Query: 58 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVA------LRNL-LRRYNQSE 110
D + P P ++ TT + N V LR++ L Y E
Sbjct: 65 D--CGNKTVTPVSPLGKKLNV-----TTAWKAQNPVLREVVDILTEQLRDIQLENYTPKE 117
Query: 111 AGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEA 170
TLQ C+ +G G Q ++DG+ ++ + + R WT A+ + +E
Sbjct: 118 P--LTLQARMSCEQKAEGHS-SGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWEN 174
Query: 171 EE-YAEEFRTYLEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLVVLGAVVTG 229
++ A F + G+C+ L +L TL+ + +P + + +G L A T
Sbjct: 175 DKVVAMSFHYFSMGDCIGWLEDFLMGMDSTLEPSAGAP------LAMSSGTTQLRATATT 228
Query: 230 AVVAAVM 236
++ ++
Sbjct: 229 LILCCLL 235
>gi|21040343 hemochromatosis protein isoform 4 precursor [Homo
sapiens]
Length = 256
Score = 45.8 bits (107), Expect = 4e-05
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 3 PRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAA 62
P LLL+L L SHSL Y S G + A+ YVDD F+ +D ++
Sbjct: 7 PALLLLMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQLFVFYDHESR 66
Query: 63 IPRMEPREPWVEQE-GPQYW 81
R+EPR PWV Q W
Sbjct: 67 --RVEPRTPWVSSRISSQMW 84
>gi|34335272 endothelial protein C receptor precursor [Homo sapiens]
Length = 238
Score = 45.1 bits (105), Expect = 6e-05
Identities = 36/179 (20%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 58 DSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSE--AGSHT 115
D++ I +++P + P+ W T ++ Q+ + L+R +Q A T
Sbjct: 62 DTNTTIIQLQPLQE------PESWART----QSGLQSYLLQFHGLVRLVHQERTLAFPLT 111
Query: 116 LQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQ--ITQRFYEAEEY 173
++ GC++ P+G + + A +G ++S + W A V +T + Y
Sbjct: 112 IRCFLGCELPPEGSRAHVFFEVAVNGSSFVSFRPERALWQADTQVTSGVVTFTLQQLNAY 171
Query: 174 AE---EFRTYLEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLVVLGAVVTG 229
E R +LE C++ +++++ E + ++ S T ++G++ G ++ V G
Sbjct: 172 NRTRYELREFLEDTCVQYVQKHI--SAENTKGSQTSRSYTSLVLGVLVGSFIIAGVAVG 228
>gi|13375656 UL16 binding protein 3 [Homo sapiens]
Length = 244
Score = 43.9 bits (102), Expect = 1e-04
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 11/194 (5%)
Query: 21 AGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFD--SDAAIPRMEPREPWVEQEGP 78
A +HSL Y T + P G+ VD FL +D SD + E +
Sbjct: 29 ADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQKNFLSYDCGSDKVLSMGHLEEQLYATDA- 87
Query: 79 QYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHA 138
W + Q R+ L + + + +G TLQ C+ DG +RG Q +
Sbjct: 88 --WGKQLEMLREVGQRLRLELADT-ELEDFTPSGPLTLQVRMSCECEADG-YIRGSWQFS 143
Query: 139 YDGKDYISLNEDLRSWTAADTVAQITQRFYEAEE-YAEEFRTYLEGECLELLRRYLENGK 197
+DG+ ++ + + R WT A+ + +E + F+ +C LR +L + K
Sbjct: 144 FDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLTTFFKMVSMRDCKSWLRDFLMHRK 203
Query: 198 ETLQRAEQSPQPTI 211
+R E + PT+
Sbjct: 204 ---KRLEPTAPPTM 214
>gi|126723295 retinoic acid early transcript 1L [Homo sapiens]
Length = 246
Score = 39.7 bits (91), Expect = 0.003
Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 23/240 (9%)
Query: 7 LLLLSGALALTDTWAGS-----HSLRYFSTAVS--RPGRGEPRYIAVE-YVDDTQFLRFD 58
LLL L L W+ + HSL Y T + RPG PR+ AV+ VD+ FL +D
Sbjct: 9 LLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYD 65
Query: 59 SDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNL-LRRYNQSEAGSHTLQ 117
+ P P ++ W D + + L ++ N + TLQ
Sbjct: 66 --CGNKTVTPVSPLGKKLNVTM-AWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLTLQ 122
Query: 118 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVA-QITQRFYEAEEYAEE 176
C+ +G G Q + DG+ ++ + + R WT A ++ +++ ++ A
Sbjct: 123 ARMSCEQKAEGHS-SGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAMS 181
Query: 177 FRTYLEGECLELLRRYLENGKETLQRAEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVM 236
F G+C+ L +L TL+ + +P + + +G L A T ++ ++
Sbjct: 182 FHYISMGDCIGWLEDFLMGMDSTLEPSAGAP------LAMSSGTTQLRATATTLILCCLL 235
>gi|130484306 retinoic acid early transcript 1G [Homo sapiens]
Length = 334
Score = 37.4 bits (85), Expect = 0.013
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 30/220 (13%)
Query: 8 LLLSGALALTDTW-----AGSHSLRYFSTAVS--RPGRGEPRYIAVE-YVDDTQFLRFDS 59
LL L L +W A HSL Y T + RPG PR+ AV+ VD+ FL +D
Sbjct: 10 LLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYDC 66
Query: 60 DAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVA-------LRNLLRRYNQSEAG 112
+ + P P ++ TT + N V L L Y E
Sbjct: 67 GSKT--VTPVSPLGKKLNV-----TTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEP- 118
Query: 113 SHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVA-QITQRFYEAE 171
TLQ C+ +G G Q ++DG+ ++ + + R WT A ++ +++ +
Sbjct: 119 -LTLQARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDK 176
Query: 172 EYAEEFRTYLEGECLELLRRYLENGKETLQRAEQSPQPTI 211
+ F G+C L +L TL+ + +P PT+
Sbjct: 177 DMTMSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAP-PTM 215
>gi|21040249 retinoic acid early transcript 1E [Homo sapiens]
Length = 263
Score = 33.1 bits (74), Expect = 0.24
Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 30/254 (11%)
Query: 2 APRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDA 61
+P LLL L L + G HSL + T S G+P A +++ FL+++SD
Sbjct: 9 SPVRLLLFLLLLLIALEIMVGGHSLCFNFTIKSLSRPGQPWCEAQVFLNKNLFLQYNSDN 68
Query: 62 AIPRMEPREPWVEQ-EGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMN 120
+ ++P ++ W T + R+ L ++ + S+ TLQ
Sbjct: 69 NM--VKPLGLLGKKVYATSTWGELTQTLGEVGRDLRMLLCDIKPQIKTSDPS--TLQVEM 124
Query: 121 GCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEE-FRT 179
C + R Q A +G+ + + +WT + A + ++ + E+ FR
Sbjct: 125 FCQREAE-RCTGASWQFATNGEKSLLFDAMNMTWTVINHEASKIKETWKKDRGLEKYFRK 183
Query: 180 YLEGECLELLRRYLENGKETLQRAEQSPQPTIPIVG---------------IVAGLVVLG 224
+G+C LR +L + E P+PT+ V I+ G +L
Sbjct: 184 LSKGDCDHWLREFLGHW-------EAMPEPTVSPVNASDIHWSSSSLPDRWIILGAFIL- 235
Query: 225 AVVTGAVVAAVMWR 238
V+ G V+ V W+
Sbjct: 236 LVLMGIVLICVWWQ 249
>gi|7706573 stromal cell derived factor 4 isoform 1 precursor [Homo
sapiens]
Length = 348
Score = 32.7 bits (73), Expect = 0.31
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 119 MNGCDMGPDGRLLRGYHQHAYDGKDYISLNED 150
+NG + DG L RG+HQ + GKD +ED
Sbjct: 62 LNGVKLEMDGHLNRGFHQEVFLGKDLGGFDED 93
>gi|18699732 stromal cell derived factor 4 isoform 2 precursor [Homo
sapiens]
Length = 362
Score = 32.7 bits (73), Expect = 0.31
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 119 MNGCDMGPDGRLLRGYHQHAYDGKDYISLNED 150
+NG + DG L RG+HQ + GKD +ED
Sbjct: 62 LNGVKLEMDGHLNRGFHQEVFLGKDLGGFDED 93
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,672,441
Number of Sequences: 37866
Number of extensions: 411885
Number of successful extensions: 1251
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 62
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.